Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03450 and HSERO_RS03455 are separated by 9 nucleotides HSERO_RS03455 and HSERO_RS03460 are separated by 30 nucleotides HSERO_RS03460 and HSERO_RS03465 are separated by 93 nucleotides HSERO_RS03465 and HSERO_RS03470 are separated by 219 nucleotides
HSERO_RS03450: HSERO_RS03450 - energy transducer protein TonB, at 754,092 to 754,790
_RS03450
HSERO_RS03455: HSERO_RS03455 - regulatory or redox protein complexing with Bfr, in iron storage and mobility, at 754,800 to 755,027
_RS03455
HSERO_RS03460: HSERO_RS03460 - hypothetical protein, at 755,058 to 755,381
_RS03460
HSERO_RS03465: HSERO_RS03465 - hemin transporter, at 755,475 to 755,663
_RS03465
HSERO_RS03470: HSERO_RS03470 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 755,883 to 756,989
_RS03470
Position (kb) 755
756 Strain fitness (log2 ratio) -2
-1
0
1 at 754.502 kb on + strand, within HSERO_RS03450 at 754.722 kb on + strand at 754.776 kb on - strand at 755.139 kb on + strand, within HSERO_RS03460 at 755.147 kb on + strand, within HSERO_RS03460 at 755.243 kb on - strand, within HSERO_RS03460 at 755.250 kb on + strand, within HSERO_RS03460 at 755.258 kb on - strand, within HSERO_RS03460 at 755.346 kb on - strand, within HSERO_RS03460 at 755.393 kb on + strand at 755.401 kb on - strand at 755.435 kb on + strand at 755.473 kb on + strand at 755.565 kb on + strand, within HSERO_RS03465 at 755.633 kb on + strand, within HSERO_RS03465
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 5 mM remove 754,502 + HSERO_RS03450 0.59 -0.7 754,722 + -1.9 754,776 - -0.2 755,139 + HSERO_RS03460 0.25 +0.2 755,147 + HSERO_RS03460 0.27 -0.8 755,243 - HSERO_RS03460 0.57 +0.2 755,250 + HSERO_RS03460 0.59 -0.1 755,258 - HSERO_RS03460 0.62 -1.1 755,346 - HSERO_RS03460 0.89 +1.3 755,393 + -0.0 755,401 - +0.3 755,435 + -0.1 755,473 + -1.1 755,565 + HSERO_RS03465 0.48 -1.3 755,633 + HSERO_RS03465 0.84 -0.2
Or see this region's nucleotide sequence