Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03335 and HSERO_RS03340 overlap by 4 nucleotides HSERO_RS03340 and HSERO_RS03345 are separated by 122 nucleotides HSERO_RS03345 and HSERO_RS03350 are separated by 227 nucleotides
HSERO_RS03335: HSERO_RS03335 - branched-chain amino acid ABC transporter permease, at 731,951 to 732,736
_RS03335
HSERO_RS03340: HSERO_RS03340 - branched-chain amino acid transporter, at 732,733 to 733,056
_RS03340
HSERO_RS03345: HSERO_RS03345 - phosphoglycerate kinase, at 733,179 to 734,369
_RS03345
HSERO_RS03350: HSERO_RS03350 - hypothetical protein, at 734,597 to 736,030
_RS03350
Position (kb) 733
734
735 Strain fitness (log2 ratio) -2
-1
0
1
2 at 732.208 kb on + strand, within HSERO_RS03335 at 732.299 kb on + strand, within HSERO_RS03335 at 732.324 kb on + strand, within HSERO_RS03335 at 732.349 kb on + strand, within HSERO_RS03335 at 732.554 kb on + strand, within HSERO_RS03335 at 732.580 kb on + strand, within HSERO_RS03335 at 732.580 kb on + strand, within HSERO_RS03335 at 732.593 kb on - strand, within HSERO_RS03335 at 732.593 kb on - strand, within HSERO_RS03335 at 732.636 kb on - strand, within HSERO_RS03335 at 732.683 kb on - strand at 732.776 kb on + strand, within HSERO_RS03340 at 732.789 kb on - strand, within HSERO_RS03340 at 732.863 kb on - strand, within HSERO_RS03340 at 732.893 kb on + strand, within HSERO_RS03340 at 732.911 kb on - strand, within HSERO_RS03340 at 732.934 kb on - strand, within HSERO_RS03340 at 733.036 kb on + strand at 733.124 kb on + strand at 733.124 kb on + strand at 733.124 kb on + strand at 733.132 kb on - strand at 734.553 kb on + strand at 734.851 kb on + strand, within HSERO_RS03350 at 734.984 kb on + strand, within HSERO_RS03350 at 735.100 kb on + strand, within HSERO_RS03350 at 735.142 kb on + strand, within HSERO_RS03350 at 735.318 kb on + strand, within HSERO_RS03350
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 5 mM remove 732,208 + HSERO_RS03335 0.33 +0.2 732,299 + HSERO_RS03335 0.44 +2.0 732,324 + HSERO_RS03335 0.47 +0.6 732,349 + HSERO_RS03335 0.51 +1.2 732,554 + HSERO_RS03335 0.77 -0.2 732,580 + HSERO_RS03335 0.80 -0.6 732,580 + HSERO_RS03335 0.80 +0.5 732,593 - HSERO_RS03335 0.82 +1.4 732,593 - HSERO_RS03335 0.82 -0.3 732,636 - HSERO_RS03335 0.87 -0.3 732,683 - -0.4 732,776 + HSERO_RS03340 0.13 -0.4 732,789 - HSERO_RS03340 0.17 -0.2 732,863 - HSERO_RS03340 0.40 -0.4 732,893 + HSERO_RS03340 0.49 +1.0 732,911 - HSERO_RS03340 0.55 -0.7 732,934 - HSERO_RS03340 0.62 -0.6 733,036 + +0.4 733,124 + -0.4 733,124 + +0.5 733,124 + -0.0 733,132 - -0.6 734,553 + -0.8 734,851 + HSERO_RS03350 0.18 -1.0 734,984 + HSERO_RS03350 0.27 -0.9 735,100 + HSERO_RS03350 0.35 -0.4 735,142 + HSERO_RS03350 0.38 -1.7 735,318 + HSERO_RS03350 0.50 -2.4
Or see this region's nucleotide sequence