Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02535 and HSERO_RS02540 are separated by 66 nucleotides HSERO_RS02540 and HSERO_RS02545 are separated by 82 nucleotides HSERO_RS02545 and HSERO_RS02550 are separated by 110 nucleotides
HSERO_RS02535: HSERO_RS02535 - short-chain dehydrogenase, at 557,829 to 558,578
_RS02535
HSERO_RS02540: HSERO_RS02540 - ABC transporter substrate-binding protein, at 558,645 to 559,682
_RS02540
HSERO_RS02545: HSERO_RS02545 - membrane protein, at 559,765 to 560,391
_RS02545
HSERO_RS02550: HSERO_RS02550 - protamine P1 domain containing protein, at 560,502 to 560,711
_RS02550
Position (kb) 558
559
560 Strain fitness (log2 ratio) -1
0
1
2 at 557.793 kb on - strand at 558.051 kb on + strand, within HSERO_RS02535 at 558.216 kb on + strand, within HSERO_RS02535 at 558.226 kb on + strand, within HSERO_RS02535 at 558.444 kb on + strand, within HSERO_RS02535 at 558.642 kb on - strand at 558.665 kb on + strand at 558.783 kb on + strand, within HSERO_RS02540 at 558.791 kb on - strand, within HSERO_RS02540 at 558.791 kb on - strand, within HSERO_RS02540 at 558.961 kb on - strand at 559.041 kb on + strand, within HSERO_RS02540 at 559.226 kb on + strand, within HSERO_RS02540 at 559.328 kb on + strand, within HSERO_RS02540 at 559.333 kb on + strand, within HSERO_RS02540 at 559.351 kb on - strand, within HSERO_RS02540 at 559.441 kb on - strand, within HSERO_RS02540 at 559.509 kb on + strand, within HSERO_RS02540 at 559.538 kb on - strand, within HSERO_RS02540 at 559.582 kb on + strand at 559.676 kb on + strand at 559.767 kb on + strand at 560.224 kb on - strand, within HSERO_RS02545 at 560.274 kb on - strand, within HSERO_RS02545 at 560.378 kb on - strand at 560.406 kb on + strand at 560.414 kb on - strand at 560.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 5 mM remove 557,793 - -0.0 558,051 + HSERO_RS02535 0.30 +1.5 558,216 + HSERO_RS02535 0.52 +0.1 558,226 + HSERO_RS02535 0.53 -0.1 558,444 + HSERO_RS02535 0.82 -0.2 558,642 - +1.1 558,665 + -0.7 558,783 + HSERO_RS02540 0.13 -0.9 558,791 - HSERO_RS02540 0.14 +0.9 558,791 - HSERO_RS02540 0.14 +1.7 558,961 - +0.5 559,041 + HSERO_RS02540 0.38 +2.2 559,226 + HSERO_RS02540 0.56 +1.8 559,328 + HSERO_RS02540 0.66 +0.0 559,333 + HSERO_RS02540 0.66 +0.1 559,351 - HSERO_RS02540 0.68 +0.2 559,441 - HSERO_RS02540 0.77 +1.4 559,509 + HSERO_RS02540 0.83 -0.4 559,538 - HSERO_RS02540 0.86 +0.4 559,582 + -0.4 559,676 + -0.7 559,767 + -0.3 560,224 - HSERO_RS02545 0.73 +0.5 560,274 - HSERO_RS02545 0.81 +0.1 560,378 - -0.3 560,406 + +0.4 560,414 - +0.7 560,414 - -1.3
Or see this region's nucleotide sequence