Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20455

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20445 and BWI76_RS20450 are separated by 20 nucleotidesBWI76_RS20450 and BWI76_RS20455 are separated by 209 nucleotidesBWI76_RS20455 and BWI76_RS20460 overlap by 1 nucleotides BWI76_RS20445: BWI76_RS20445 - endonuclease SmrB, at 4,279,549 to 4,280,100 _RS20445 BWI76_RS20450: BWI76_RS20450 - phosphohistidine phosphatase, at 4,280,121 to 4,280,606 _RS20450 BWI76_RS20455: BWI76_RS20455 - multifunctional fatty acid oxidation complex subunit alpha, at 4,280,816 to 4,282,960 _RS20455 BWI76_RS20460: BWI76_RS20460 - acetyl-CoA C-acyltransferase FadI, at 4,282,960 to 4,284,270 _RS20460 Position (kb) 4280 4281 4282 4283Strain fitness (log2 ratio) -1 0 1 2 3at 4280.944 kb on - strandat 4280.947 kb on + strandat 4281.002 kb on + strandat 4281.347 kb on - strand, within BWI76_RS20455at 4281.620 kb on + strand, within BWI76_RS20455at 4281.648 kb on - strand, within BWI76_RS20455at 4281.656 kb on - strand, within BWI76_RS20455at 4281.714 kb on + strand, within BWI76_RS20455at 4281.906 kb on - strand, within BWI76_RS20455at 4281.906 kb on - strand, within BWI76_RS20455at 4282.004 kb on + strand, within BWI76_RS20455at 4282.380 kb on + strand, within BWI76_RS20455at 4282.432 kb on - strand, within BWI76_RS20455at 4282.593 kb on - strand, within BWI76_RS20455at 4282.606 kb on + strand, within BWI76_RS20455at 4282.619 kb on + strand, within BWI76_RS20455at 4282.815 kb on - strandat 4282.911 kb on + strandat 4282.977 kb on - strandat 4282.998 kb on - strandat 4283.206 kb on + strand, within BWI76_RS20460at 4283.214 kb on - strand, within BWI76_RS20460at 4283.625 kb on - strand, within BWI76_RS20460at 4283.648 kb on - strandat 4283.796 kb on + strand, within BWI76_RS20460at 4283.897 kb on - strand, within BWI76_RS20460

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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4,280,944 - +0.2
4,280,947 + +0.5
4,281,002 + +0.7
4,281,347 - BWI76_RS20455 0.25 -0.1
4,281,620 + BWI76_RS20455 0.37 +0.3
4,281,648 - BWI76_RS20455 0.39 +3.0
4,281,656 - BWI76_RS20455 0.39 +0.5
4,281,714 + BWI76_RS20455 0.42 -0.3
4,281,906 - BWI76_RS20455 0.51 +0.1
4,281,906 - BWI76_RS20455 0.51 +0.6
4,282,004 + BWI76_RS20455 0.55 -0.3
4,282,380 + BWI76_RS20455 0.73 +0.7
4,282,432 - BWI76_RS20455 0.75 +0.1
4,282,593 - BWI76_RS20455 0.83 +0.6
4,282,606 + BWI76_RS20455 0.83 +1.2
4,282,619 + BWI76_RS20455 0.84 +0.4
4,282,815 - +0.7
4,282,911 + +1.2
4,282,977 - +1.0
4,282,998 - -0.6
4,283,206 + BWI76_RS20460 0.19 -0.9
4,283,214 - BWI76_RS20460 0.19 +0.2
4,283,625 - BWI76_RS20460 0.51 +3.3
4,283,648 - +2.3
4,283,796 + BWI76_RS20460 0.64 +1.0
4,283,897 - BWI76_RS20460 0.71 -0.5

Or see this region's nucleotide sequence