Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19825

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19815 and BWI76_RS19820 are separated by 137 nucleotidesBWI76_RS19820 and BWI76_RS19825 are separated by 61 nucleotidesBWI76_RS19825 and BWI76_RS19830 are separated by 80 nucleotidesBWI76_RS19830 and BWI76_RS19835 are separated by 50 nucleotides BWI76_RS19815: BWI76_RS19815 - ATP-dependent helicase, at 4,143,952 to 4,145,709 _RS19815 BWI76_RS19820: BWI76_RS19820 - 50S ribosomal protein L25, at 4,145,847 to 4,146,131 _RS19820 BWI76_RS19825: BWI76_RS19825 - DNA mismatch repair protein MutT, at 4,146,193 to 4,146,786 _RS19825 BWI76_RS19830: BWI76_RS19830 - DeoR family transcriptional regulator, at 4,146,867 to 4,147,625 _RS19830 BWI76_RS19835: BWI76_RS19835 - nucleoid-associated protein YejK, at 4,147,676 to 4,148,683 _RS19835 Position (kb) 4146 4147Strain fitness (log2 ratio) -1 0 1at 4145.306 kb on + strand, within BWI76_RS19815at 4145.481 kb on + strand, within BWI76_RS19815at 4145.494 kb on - strand, within BWI76_RS19815at 4145.504 kb on + strand, within BWI76_RS19815at 4145.504 kb on + strand, within BWI76_RS19815at 4145.523 kb on - strand, within BWI76_RS19815at 4145.534 kb on + strandat 4146.196 kb on + strandat 4146.557 kb on + strand, within BWI76_RS19825at 4146.665 kb on - strand, within BWI76_RS19825at 4146.691 kb on + strand, within BWI76_RS19825at 4147.569 kb on - strandat 4147.625 kb on + strandat 4147.628 kb on - strandat 4147.628 kb on - strandat 4147.717 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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4,145,306 + BWI76_RS19815 0.77 +0.4
4,145,481 + BWI76_RS19815 0.87 +0.3
4,145,494 - BWI76_RS19815 0.88 +0.3
4,145,504 + BWI76_RS19815 0.88 +0.6
4,145,504 + BWI76_RS19815 0.88 -0.4
4,145,523 - BWI76_RS19815 0.89 -0.2
4,145,534 + +0.1
4,146,196 + +0.2
4,146,557 + BWI76_RS19825 0.61 +1.0
4,146,665 - BWI76_RS19825 0.79 +0.6
4,146,691 + BWI76_RS19825 0.84 +0.1
4,147,569 - +0.8
4,147,625 + +0.3
4,147,628 - +0.2
4,147,628 - +0.5
4,147,717 + -0.3

Or see this region's nucleotide sequence