Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19795

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19790 and BWI76_RS19795 are separated by 1 nucleotidesBWI76_RS19795 and BWI76_RS19800 are separated by 3 nucleotidesBWI76_RS19800 and BWI76_RS19805 are separated by 330 nucleotides BWI76_RS19790: BWI76_RS19790 - putative binding-protein-dependent transporter, at 4,138,597 to 4,139,622 _RS19790 BWI76_RS19795: BWI76_RS19795 - microcin C ABC transporter ATP-binding protein YejF, at 4,139,624 to 4,141,213 _RS19795 BWI76_RS19800: BWI76_RS19800 - hypothetical protein, at 4,141,217 to 4,141,561 _RS19800 BWI76_RS19805: BWI76_RS19805 - Bcr/CflA family multidrug efflux MFS transporter, at 4,141,892 to 4,143,088 _RS19805 Position (kb) 4139 4140 4141 4142Strain fitness (log2 ratio) -1 0 1 2 3at 4138.837 kb on - strand, within BWI76_RS19790at 4138.964 kb on - strand, within BWI76_RS19790at 4139.086 kb on + strand, within BWI76_RS19790at 4139.115 kb on + strand, within BWI76_RS19790at 4139.181 kb on + strand, within BWI76_RS19790at 4139.189 kb on - strand, within BWI76_RS19790at 4139.393 kb on + strand, within BWI76_RS19790at 4140.272 kb on - strand, within BWI76_RS19795at 4140.272 kb on - strand, within BWI76_RS19795at 4140.381 kb on - strand, within BWI76_RS19795at 4140.381 kb on - strand, within BWI76_RS19795at 4140.409 kb on + strand, within BWI76_RS19795at 4140.577 kb on - strand, within BWI76_RS19795at 4140.926 kb on + strand, within BWI76_RS19795at 4141.032 kb on - strand, within BWI76_RS19795at 4141.052 kb on - strand, within BWI76_RS19795at 4141.109 kb on - strandat 4141.152 kb on - strandat 4141.532 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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4,138,837 - BWI76_RS19790 0.23 -0.1
4,138,964 - BWI76_RS19790 0.36 -0.9
4,139,086 + BWI76_RS19790 0.48 -0.7
4,139,115 + BWI76_RS19790 0.50 +0.3
4,139,181 + BWI76_RS19790 0.57 +1.2
4,139,189 - BWI76_RS19790 0.58 +0.2
4,139,393 + BWI76_RS19790 0.78 +2.2
4,140,272 - BWI76_RS19795 0.41 -0.3
4,140,272 - BWI76_RS19795 0.41 +0.3
4,140,381 - BWI76_RS19795 0.48 +0.4
4,140,381 - BWI76_RS19795 0.48 +0.1
4,140,409 + BWI76_RS19795 0.49 +1.7
4,140,577 - BWI76_RS19795 0.60 -0.0
4,140,926 + BWI76_RS19795 0.82 +0.8
4,141,032 - BWI76_RS19795 0.89 +2.9
4,141,052 - BWI76_RS19795 0.90 -0.1
4,141,109 - +1.4
4,141,152 - -0.7
4,141,532 + +0.3

Or see this region's nucleotide sequence