Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15305

Experiment: copper (II) chloride 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS15290 and BWI76_RS15295 are separated by 17 nucleotidesBWI76_RS15295 and BWI76_RS15300 are separated by 30 nucleotidesBWI76_RS15300 and BWI76_RS15305 are separated by 31 nucleotidesBWI76_RS15305 and BWI76_RS15310 are separated by 192 nucleotides BWI76_RS15290: BWI76_RS15290 - transcriptional regulator, at 3,204,237 to 3,204,671 _RS15290 BWI76_RS15295: BWI76_RS15295 - MDR efflux pump AcrAB transcriptional activator MarA, at 3,204,689 to 3,205,069 _RS15295 BWI76_RS15300: BWI76_RS15300 - multiple antibiotic resistance regulatory periplasmic protein MarB, at 3,205,100 to 3,205,318 _RS15300 BWI76_RS15305: BWI76_RS15305 - O-acetylserine/cysteine exporter, at 3,205,350 to 3,206,249 _RS15305 BWI76_RS15310: BWI76_RS15310 - MFS transporter, at 3,206,442 to 3,207,635 _RS15310 Position (kb) 3205 3206 3207Strain fitness (log2 ratio) -1 0 1at 3204.393 kb on + strand, within BWI76_RS15290at 3204.632 kb on + strandat 3204.875 kb on - strand, within BWI76_RS15295at 3204.875 kb on - strand, within BWI76_RS15295at 3204.917 kb on + strand, within BWI76_RS15295at 3204.918 kb on + strand, within BWI76_RS15295at 3204.926 kb on - strand, within BWI76_RS15295at 3205.029 kb on - strand, within BWI76_RS15295at 3205.150 kb on - strand, within BWI76_RS15300at 3205.156 kb on - strand, within BWI76_RS15300at 3205.163 kb on + strand, within BWI76_RS15300at 3205.171 kb on - strand, within BWI76_RS15300at 3205.256 kb on + strand, within BWI76_RS15300at 3205.296 kb on + strand, within BWI76_RS15300at 3205.560 kb on - strand, within BWI76_RS15305at 3205.788 kb on + strand, within BWI76_RS15305at 3206.111 kb on - strand, within BWI76_RS15305at 3206.314 kb on + strandat 3206.379 kb on - strandat 3206.525 kb on - strandat 3206.717 kb on + strand, within BWI76_RS15310at 3206.762 kb on - strand, within BWI76_RS15310at 3206.764 kb on - strand, within BWI76_RS15310at 3206.925 kb on - strand, within BWI76_RS15310at 3207.014 kb on + strandat 3207.022 kb on - strand, within BWI76_RS15310at 3207.070 kb on + strand, within BWI76_RS15310at 3207.071 kb on - strand, within BWI76_RS15310at 3207.073 kb on - strand, within BWI76_RS15310at 3207.078 kb on - strand, within BWI76_RS15310

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
remove
3,204,393 + BWI76_RS15290 0.36 +0.7
3,204,632 + +0.5
3,204,875 - BWI76_RS15295 0.49 -1.3
3,204,875 - BWI76_RS15295 0.49 -0.1
3,204,917 + BWI76_RS15295 0.60 -0.3
3,204,918 + BWI76_RS15295 0.60 +0.7
3,204,926 - BWI76_RS15295 0.62 -0.2
3,205,029 - BWI76_RS15295 0.89 +1.0
3,205,150 - BWI76_RS15300 0.23 -0.5
3,205,156 - BWI76_RS15300 0.26 -1.3
3,205,163 + BWI76_RS15300 0.29 -0.6
3,205,171 - BWI76_RS15300 0.32 +0.1
3,205,256 + BWI76_RS15300 0.71 -0.4
3,205,296 + BWI76_RS15300 0.89 +0.9
3,205,560 - BWI76_RS15305 0.23 -1.1
3,205,788 + BWI76_RS15305 0.49 -1.6
3,206,111 - BWI76_RS15305 0.85 +0.0
3,206,314 + -0.2
3,206,379 - +0.3
3,206,525 - +0.1
3,206,717 + BWI76_RS15310 0.23 -0.7
3,206,762 - BWI76_RS15310 0.27 -1.1
3,206,764 - BWI76_RS15310 0.27 -0.2
3,206,925 - BWI76_RS15310 0.40 -0.3
3,207,014 + +1.3
3,207,022 - BWI76_RS15310 0.49 +0.1
3,207,070 + BWI76_RS15310 0.53 -0.2
3,207,071 - BWI76_RS15310 0.53 -0.2
3,207,073 - BWI76_RS15310 0.53 +0.3
3,207,078 - BWI76_RS15310 0.53 -0.4

Or see this region's nucleotide sequence