Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27470

Experiment: 4C survival; 360 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27465 and AO356_27470 are separated by 306 nucleotidesAO356_27470 and AO356_27475 are separated by 151 nucleotides AO356_27465: AO356_27465 - ketoglutarate semialdehyde dehydrogenase, at 6,258,633 to 6,260,213 _27465 AO356_27470: AO356_27470 - 3-phenylpropionic acid transporter, at 6,260,520 to 6,261,962 _27470 AO356_27475: AO356_27475 - shikimate dehydrogenase, at 6,262,114 to 6,262,938 _27475 Position (kb) 6260 6261 6262Strain fitness (log2 ratio) -2 -1 0 1at 6259.552 kb on + strand, within AO356_27465at 6259.923 kb on - strand, within AO356_27465at 6260.211 kb on + strandat 6260.211 kb on + strandat 6260.212 kb on - strandat 6260.279 kb on - strandat 6260.289 kb on - strandat 6260.346 kb on - strandat 6260.565 kb on - strandat 6260.565 kb on - strandat 6260.565 kb on - strandat 6260.607 kb on + strandat 6260.608 kb on - strandat 6260.608 kb on - strandat 6260.611 kb on - strandat 6260.611 kb on - strandat 6260.621 kb on + strandat 6260.622 kb on - strandat 6260.625 kb on + strandat 6260.626 kb on - strandat 6260.645 kb on - strandat 6260.724 kb on + strand, within AO356_27470at 6260.724 kb on + strand, within AO356_27470at 6260.725 kb on - strand, within AO356_27470at 6260.725 kb on - strand, within AO356_27470at 6260.727 kb on - strand, within AO356_27470at 6260.755 kb on + strand, within AO356_27470at 6260.849 kb on + strand, within AO356_27470at 6260.850 kb on - strand, within AO356_27470at 6260.853 kb on + strand, within AO356_27470at 6260.853 kb on + strand, within AO356_27470at 6260.853 kb on + strand, within AO356_27470at 6260.854 kb on - strand, within AO356_27470at 6260.854 kb on - strand, within AO356_27470at 6260.854 kb on - strand, within AO356_27470at 6260.854 kb on - strand, within AO356_27470at 6260.854 kb on - strand, within AO356_27470at 6260.867 kb on + strand, within AO356_27470at 6260.868 kb on - strand, within AO356_27470at 6260.868 kb on - strand, within AO356_27470at 6260.890 kb on + strand, within AO356_27470at 6260.890 kb on + strand, within AO356_27470at 6260.890 kb on + strand, within AO356_27470at 6261.000 kb on - strand, within AO356_27470at 6261.032 kb on - strand, within AO356_27470at 6261.209 kb on + strand, within AO356_27470at 6261.256 kb on + strand, within AO356_27470at 6261.286 kb on + strand, within AO356_27470at 6261.287 kb on - strand, within AO356_27470at 6261.287 kb on - strand, within AO356_27470at 6261.364 kb on + strand, within AO356_27470at 6261.364 kb on + strand, within AO356_27470at 6261.385 kb on + strand, within AO356_27470at 6261.386 kb on - strand, within AO356_27470at 6261.386 kb on - strand, within AO356_27470at 6261.392 kb on + strand, within AO356_27470at 6261.392 kb on + strand, within AO356_27470at 6261.392 kb on + strand, within AO356_27470at 6261.392 kb on + strand, within AO356_27470at 6261.392 kb on + strand, within AO356_27470at 6261.392 kb on + strand, within AO356_27470at 6261.393 kb on - strand, within AO356_27470at 6261.393 kb on - strand, within AO356_27470at 6261.393 kb on - strand, within AO356_27470at 6261.393 kb on - strand, within AO356_27470at 6261.393 kb on - strand, within AO356_27470at 6261.393 kb on - strand, within AO356_27470at 6261.394 kb on + strand, within AO356_27470at 6261.395 kb on - strand, within AO356_27470at 6261.395 kb on - strand, within AO356_27470at 6261.395 kb on - strand, within AO356_27470at 6261.395 kb on - strand, within AO356_27470at 6261.405 kb on - strand, within AO356_27470at 6261.425 kb on + strand, within AO356_27470at 6261.425 kb on + strand, within AO356_27470at 6261.438 kb on - strand, within AO356_27470at 6261.475 kb on + strand, within AO356_27470at 6261.476 kb on - strand, within AO356_27470at 6261.487 kb on + strand, within AO356_27470at 6261.487 kb on + strand, within AO356_27470at 6261.501 kb on + strand, within AO356_27470at 6261.501 kb on + strand, within AO356_27470at 6261.507 kb on + strand, within AO356_27470at 6261.507 kb on + strand, within AO356_27470at 6261.507 kb on + strand, within AO356_27470at 6261.507 kb on + strand, within AO356_27470at 6261.508 kb on - strand, within AO356_27470at 6261.527 kb on + strand, within AO356_27470at 6261.527 kb on + strand, within AO356_27470at 6261.528 kb on - strand, within AO356_27470at 6261.528 kb on - strand, within AO356_27470at 6261.573 kb on + strand, within AO356_27470at 6261.585 kb on - strand, within AO356_27470at 6261.631 kb on + strand, within AO356_27470at 6261.631 kb on + strand, within AO356_27470at 6261.631 kb on + strand, within AO356_27470at 6261.632 kb on - strand, within AO356_27470at 6261.664 kb on + strand, within AO356_27470at 6261.664 kb on + strand, within AO356_27470at 6261.664 kb on + strand, within AO356_27470at 6261.664 kb on + strand, within AO356_27470at 6261.665 kb on - strand, within AO356_27470at 6261.665 kb on - strand, within AO356_27470at 6261.665 kb on - strand, within AO356_27470at 6261.665 kb on - strand, within AO356_27470at 6261.731 kb on + strand, within AO356_27470at 6261.731 kb on + strand, within AO356_27470at 6261.794 kb on + strand, within AO356_27470at 6261.794 kb on + strand, within AO356_27470at 6261.794 kb on + strand, within AO356_27470at 6261.794 kb on + strand, within AO356_27470at 6261.794 kb on + strand, within AO356_27470at 6261.794 kb on + strand, within AO356_27470at 6261.794 kb on + strand, within AO356_27470at 6261.795 kb on - strand, within AO356_27470at 6261.795 kb on - strand, within AO356_27470at 6261.797 kb on + strand, within AO356_27470at 6261.870 kb on + strandat 6261.870 kb on + strandat 6261.871 kb on - strandat 6262.063 kb on + strandat 6262.064 kb on - strandat 6262.105 kb on + strandat 6262.143 kb on + strandat 6262.143 kb on + strandat 6262.143 kb on + strandat 6262.143 kb on + strandat 6262.144 kb on - strandat 6262.144 kb on - strandat 6262.144 kb on - strandat 6262.144 kb on - strandat 6262.144 kb on - strandat 6262.144 kb on - strandat 6262.145 kb on + strandat 6262.145 kb on + strandat 6262.145 kb on + strandat 6262.145 kb on + strandat 6262.145 kb on + strandat 6262.145 kb on + strandat 6262.146 kb on - strandat 6262.146 kb on - strandat 6262.146 kb on - strandat 6262.146 kb on - strandat 6262.146 kb on - strandat 6262.146 kb on - strandat 6262.146 kb on - strandat 6262.146 kb on - strandat 6262.146 kb on - strandat 6262.146 kb on - strandat 6262.146 kb on - strandat 6262.146 kb on - strandat 6262.146 kb on - strandat 6262.147 kb on + strandat 6262.147 kb on + strandat 6262.147 kb on + strandat 6262.147 kb on + strandat 6262.148 kb on - strandat 6262.148 kb on - strandat 6262.148 kb on - strandat 6262.200 kb on + strand, within AO356_27475at 6262.200 kb on + strand, within AO356_27475at 6262.200 kb on + strand, within AO356_27475at 6262.200 kb on + strand, within AO356_27475at 6262.201 kb on - strand, within AO356_27475at 6262.201 kb on - strand, within AO356_27475at 6262.250 kb on + strand, within AO356_27475at 6262.250 kb on + strand, within AO356_27475at 6262.251 kb on - strand, within AO356_27475at 6262.251 kb on - strand, within AO356_27475at 6262.254 kb on + strand, within AO356_27475at 6262.255 kb on - strand, within AO356_27475at 6262.255 kb on - strand, within AO356_27475at 6262.460 kb on + strand, within AO356_27475at 6262.512 kb on + strand, within AO356_27475at 6262.514 kb on + strand, within AO356_27475at 6262.515 kb on - strand, within AO356_27475at 6262.620 kb on - strand, within AO356_27475at 6262.654 kb on + strand, within AO356_27475at 6262.655 kb on - strand, within AO356_27475at 6262.738 kb on - strand, within AO356_27475at 6262.740 kb on - strand, within AO356_27475at 6262.779 kb on + strand, within AO356_27475at 6262.936 kb on + strandat 6262.936 kb on + strandat 6262.954 kb on + strandat 6262.954 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 360 hrs
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6,259,552 + AO356_27465 0.58 -0.6
6,259,923 - AO356_27465 0.82 -0.8
6,260,211 + -0.7
6,260,211 + -0.9
6,260,212 - +0.1
6,260,279 - +0.2
6,260,289 - +0.2
6,260,346 - -1.6
6,260,565 - +0.5
6,260,565 - +1.1
6,260,565 - -1.1
6,260,607 + -0.6
6,260,608 - +0.8
6,260,608 - -0.2
6,260,611 - +0.1
6,260,611 - +0.4
6,260,621 + -0.6
6,260,622 - +0.1
6,260,625 + +0.4
6,260,626 - +0.5
6,260,645 - -1.0
6,260,724 + AO356_27470 0.14 +0.6
6,260,724 + AO356_27470 0.14 -0.5
6,260,725 - AO356_27470 0.14 +0.7
6,260,725 - AO356_27470 0.14 +0.8
6,260,727 - AO356_27470 0.14 -1.1
6,260,755 + AO356_27470 0.16 -1.3
6,260,849 + AO356_27470 0.23 +0.8
6,260,850 - AO356_27470 0.23 -0.3
6,260,853 + AO356_27470 0.23 +0.3
6,260,853 + AO356_27470 0.23 +0.0
6,260,853 + AO356_27470 0.23 -0.3
6,260,854 - AO356_27470 0.23 -0.7
6,260,854 - AO356_27470 0.23 +0.9
6,260,854 - AO356_27470 0.23 +0.7
6,260,854 - AO356_27470 0.23 -0.9
6,260,854 - AO356_27470 0.23 +0.2
6,260,867 + AO356_27470 0.24 -0.1
6,260,868 - AO356_27470 0.24 +1.0
6,260,868 - AO356_27470 0.24 +0.3
6,260,890 + AO356_27470 0.26 +0.4
6,260,890 + AO356_27470 0.26 +0.3
6,260,890 + AO356_27470 0.26 +0.6
6,261,000 - AO356_27470 0.33 -1.5
6,261,032 - AO356_27470 0.35 -0.1
6,261,209 + AO356_27470 0.48 -1.1
6,261,256 + AO356_27470 0.51 +0.1
6,261,286 + AO356_27470 0.53 -0.2
6,261,287 - AO356_27470 0.53 -0.1
6,261,287 - AO356_27470 0.53 +1.3
6,261,364 + AO356_27470 0.58 +0.1
6,261,364 + AO356_27470 0.58 -0.2
6,261,385 + AO356_27470 0.60 +0.5
6,261,386 - AO356_27470 0.60 -0.2
6,261,386 - AO356_27470 0.60 +0.3
6,261,392 + AO356_27470 0.60 -0.7
6,261,392 + AO356_27470 0.60 -0.8
6,261,392 + AO356_27470 0.60 -0.6
6,261,392 + AO356_27470 0.60 -0.0
6,261,392 + AO356_27470 0.60 -0.3
6,261,392 + AO356_27470 0.60 +0.8
6,261,393 - AO356_27470 0.60 -0.4
6,261,393 - AO356_27470 0.60 -0.1
6,261,393 - AO356_27470 0.60 +0.8
6,261,393 - AO356_27470 0.60 -0.5
6,261,393 - AO356_27470 0.60 +0.5
6,261,393 - AO356_27470 0.60 -0.3
6,261,394 + AO356_27470 0.61 -0.5
6,261,395 - AO356_27470 0.61 -0.3
6,261,395 - AO356_27470 0.61 +0.0
6,261,395 - AO356_27470 0.61 +0.3
6,261,395 - AO356_27470 0.61 +1.2
6,261,405 - AO356_27470 0.61 +1.3
6,261,425 + AO356_27470 0.63 +1.3
6,261,425 + AO356_27470 0.63 -1.1
6,261,438 - AO356_27470 0.64 +0.4
6,261,475 + AO356_27470 0.66 +0.3
6,261,476 - AO356_27470 0.66 -0.2
6,261,487 + AO356_27470 0.67 +0.7
6,261,487 + AO356_27470 0.67 +0.0
6,261,501 + AO356_27470 0.68 +0.1
6,261,501 + AO356_27470 0.68 -0.6
6,261,507 + AO356_27470 0.68 +0.1
6,261,507 + AO356_27470 0.68 -0.3
6,261,507 + AO356_27470 0.68 +0.2
6,261,507 + AO356_27470 0.68 +1.3
6,261,508 - AO356_27470 0.68 +0.3
6,261,527 + AO356_27470 0.70 +0.4
6,261,527 + AO356_27470 0.70 -0.4
6,261,528 - AO356_27470 0.70 +0.1
6,261,528 - AO356_27470 0.70 +1.1
6,261,573 + AO356_27470 0.73 -1.4
6,261,585 - AO356_27470 0.74 +0.2
6,261,631 + AO356_27470 0.77 +0.3
6,261,631 + AO356_27470 0.77 +0.8
6,261,631 + AO356_27470 0.77 +0.5
6,261,632 - AO356_27470 0.77 -0.1
6,261,664 + AO356_27470 0.79 +0.3
6,261,664 + AO356_27470 0.79 -0.2
6,261,664 + AO356_27470 0.79 +0.8
6,261,664 + AO356_27470 0.79 -0.1
6,261,665 - AO356_27470 0.79 +0.6
6,261,665 - AO356_27470 0.79 +0.1
6,261,665 - AO356_27470 0.79 +0.0
6,261,665 - AO356_27470 0.79 +0.0
6,261,731 + AO356_27470 0.84 +0.5
6,261,731 + AO356_27470 0.84 +0.5
6,261,794 + AO356_27470 0.88 +0.7
6,261,794 + AO356_27470 0.88 -0.4
6,261,794 + AO356_27470 0.88 -1.9
6,261,794 + AO356_27470 0.88 +0.5
6,261,794 + AO356_27470 0.88 -0.7
6,261,794 + AO356_27470 0.88 -0.1
6,261,794 + AO356_27470 0.88 -1.4
6,261,795 - AO356_27470 0.88 +0.0
6,261,795 - AO356_27470 0.88 -1.9
6,261,797 + AO356_27470 0.88 +1.0
6,261,870 + +0.6
6,261,870 + +0.5
6,261,871 - -1.6
6,262,063 + +0.3
6,262,064 - +0.0
6,262,105 + +0.1
6,262,143 + +0.8
6,262,143 + -0.0
6,262,143 + -0.2
6,262,143 + +0.6
6,262,144 - -1.0
6,262,144 - +0.3
6,262,144 - +0.2
6,262,144 - -0.0
6,262,144 - +0.7
6,262,144 - +0.9
6,262,145 + -0.1
6,262,145 + -0.1
6,262,145 + -0.2
6,262,145 + +0.2
6,262,145 + +0.1
6,262,145 + +1.4
6,262,146 - -0.2
6,262,146 - -0.2
6,262,146 - +1.4
6,262,146 - +0.9
6,262,146 - +0.3
6,262,146 - +0.9
6,262,146 - +0.4
6,262,146 - +0.6
6,262,146 - +0.5
6,262,146 - -2.0
6,262,146 - -1.5
6,262,146 - +0.1
6,262,146 - +0.1
6,262,147 + -0.6
6,262,147 + +0.4
6,262,147 + -0.9
6,262,147 + -0.2
6,262,148 - -0.1
6,262,148 - +0.3
6,262,148 - +0.5
6,262,200 + AO356_27475 0.10 -0.4
6,262,200 + AO356_27475 0.10 +0.7
6,262,200 + AO356_27475 0.10 -0.2
6,262,200 + AO356_27475 0.10 +0.4
6,262,201 - AO356_27475 0.11 -0.8
6,262,201 - AO356_27475 0.11 -0.7
6,262,250 + AO356_27475 0.16 -0.2
6,262,250 + AO356_27475 0.16 -0.4
6,262,251 - AO356_27475 0.17 +0.8
6,262,251 - AO356_27475 0.17 -0.2
6,262,254 + AO356_27475 0.17 -0.2
6,262,255 - AO356_27475 0.17 +0.7
6,262,255 - AO356_27475 0.17 +0.6
6,262,460 + AO356_27475 0.42 +0.1
6,262,512 + AO356_27475 0.48 +0.4
6,262,514 + AO356_27475 0.48 +0.5
6,262,515 - AO356_27475 0.49 +0.7
6,262,620 - AO356_27475 0.61 -0.9
6,262,654 + AO356_27475 0.65 +0.2
6,262,655 - AO356_27475 0.66 -0.2
6,262,738 - AO356_27475 0.76 -0.6
6,262,740 - AO356_27475 0.76 -0.6
6,262,779 + AO356_27475 0.81 -0.2
6,262,936 + -0.6
6,262,936 + -0.8
6,262,954 + -0.7
6,262,954 + +1.0

Or see this region's nucleotide sequence