Experiment: 4C survival; 360 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24640 and AO356_24645 overlap by 4 nucleotides AO356_24645 and AO356_24650 overlap by 4 nucleotides
AO356_24640: AO356_24640 - protein BatD, at 5,572,321 to 5,573,958
_24640
AO356_24645: AO356_24645 - hypothetical protein, at 5,573,955 to 5,575,691
_24645
AO356_24650: AO356_24650 - BatB protein, at 5,575,688 to 5,576,767
_24650
Position (kb) 5573
5574
5575
5576 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5573.345 kb on + strand, within AO356_24640 at 5573.346 kb on - strand, within AO356_24640 at 5573.346 kb on - strand, within AO356_24640 at 5573.402 kb on + strand, within AO356_24640 at 5573.403 kb on - strand, within AO356_24640 at 5573.492 kb on + strand, within AO356_24640 at 5573.493 kb on - strand, within AO356_24640 at 5573.493 kb on - strand, within AO356_24640 at 5573.493 kb on - strand, within AO356_24640 at 5573.528 kb on + strand, within AO356_24640 at 5573.528 kb on + strand, within AO356_24640 at 5573.528 kb on + strand, within AO356_24640 at 5573.528 kb on + strand, within AO356_24640 at 5573.529 kb on - strand, within AO356_24640 at 5573.529 kb on - strand, within AO356_24640 at 5573.529 kb on - strand, within AO356_24640 at 5573.529 kb on - strand, within AO356_24640 at 5573.529 kb on - strand, within AO356_24640 at 5573.529 kb on - strand, within AO356_24640 at 5574.005 kb on + strand at 5574.472 kb on + strand, within AO356_24645 at 5574.523 kb on + strand, within AO356_24645 at 5574.523 kb on + strand, within AO356_24645 at 5574.524 kb on - strand, within AO356_24645 at 5574.967 kb on + strand, within AO356_24645 at 5574.967 kb on + strand, within AO356_24645 at 5574.967 kb on + strand, within AO356_24645 at 5574.968 kb on - strand, within AO356_24645 at 5574.968 kb on - strand, within AO356_24645 at 5574.968 kb on - strand, within AO356_24645 at 5575.276 kb on + strand, within AO356_24645 at 5575.277 kb on - strand, within AO356_24645 at 5575.326 kb on + strand, within AO356_24645 at 5575.399 kb on - strand, within AO356_24645 at 5575.820 kb on + strand, within AO356_24650 at 5575.820 kb on + strand, within AO356_24650 at 5575.820 kb on + strand, within AO356_24650 at 5575.821 kb on - strand, within AO356_24650 at 5575.821 kb on - strand, within AO356_24650 at 5575.858 kb on - strand, within AO356_24650 at 5575.858 kb on - strand, within AO356_24650 at 5575.966 kb on - strand, within AO356_24650 at 5576.138 kb on + strand, within AO356_24650 at 5576.139 kb on - strand, within AO356_24650 at 5576.331 kb on + strand, within AO356_24650 at 5576.582 kb on - strand, within AO356_24650
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 360 hrs remove 5,573,345 + AO356_24640 0.63 -1.0 5,573,346 - AO356_24640 0.63 +0.1 5,573,346 - AO356_24640 0.63 -1.9 5,573,402 + AO356_24640 0.66 -0.6 5,573,403 - AO356_24640 0.66 -1.9 5,573,492 + AO356_24640 0.71 -0.1 5,573,493 - AO356_24640 0.72 -0.1 5,573,493 - AO356_24640 0.72 -2.2 5,573,493 - AO356_24640 0.72 +0.5 5,573,528 + AO356_24640 0.74 -1.9 5,573,528 + AO356_24640 0.74 -1.1 5,573,528 + AO356_24640 0.74 -0.3 5,573,528 + AO356_24640 0.74 -1.6 5,573,529 - AO356_24640 0.74 -1.5 5,573,529 - AO356_24640 0.74 -1.1 5,573,529 - AO356_24640 0.74 -1.7 5,573,529 - AO356_24640 0.74 -0.9 5,573,529 - AO356_24640 0.74 +0.7 5,573,529 - AO356_24640 0.74 -0.6 5,574,005 + -1.1 5,574,472 + AO356_24645 0.30 -0.5 5,574,523 + AO356_24645 0.33 -0.1 5,574,523 + AO356_24645 0.33 -0.5 5,574,524 - AO356_24645 0.33 -2.5 5,574,967 + AO356_24645 0.58 -0.0 5,574,967 + AO356_24645 0.58 -0.6 5,574,967 + AO356_24645 0.58 -0.9 5,574,968 - AO356_24645 0.58 -2.1 5,574,968 - AO356_24645 0.58 -1.6 5,574,968 - AO356_24645 0.58 +0.4 5,575,276 + AO356_24645 0.76 -0.3 5,575,277 - AO356_24645 0.76 -2.1 5,575,326 + AO356_24645 0.79 +0.7 5,575,399 - AO356_24645 0.83 -1.1 5,575,820 + AO356_24650 0.12 -0.5 5,575,820 + AO356_24650 0.12 -0.3 5,575,820 + AO356_24650 0.12 +0.5 5,575,821 - AO356_24650 0.12 -1.0 5,575,821 - AO356_24650 0.12 +0.3 5,575,858 - AO356_24650 0.16 -2.9 5,575,858 - AO356_24650 0.16 -0.8 5,575,966 - AO356_24650 0.26 -0.7 5,576,138 + AO356_24650 0.42 -2.4 5,576,139 - AO356_24650 0.42 -0.3 5,576,331 + AO356_24650 0.60 -1.8 5,576,582 - AO356_24650 0.83 -1.0
Or see this region's nucleotide sequence