Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24420

Experiment: 4C survival; 360 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24410 and AO356_24415 are separated by 182 nucleotidesAO356_24415 and AO356_24420 are separated by 23 nucleotidesAO356_24420 and AO356_24425 are separated by 146 nucleotidesAO356_24425 and AO356_24430 are separated by 175 nucleotides AO356_24410: AO356_24410 - alanine acetyltransferase, at 5,512,894 to 5,513,382 _24410 AO356_24415: AO356_24415 - DNA-3-methyladenine glycosylase, at 5,513,565 to 5,514,182 _24415 AO356_24420: AO356_24420 - XRE family transcriptional regulator, at 5,514,206 to 5,515,288 _24420 AO356_24425: AO356_24425 - hypothetical protein, at 5,515,435 to 5,515,923 _24425 AO356_24430: AO356_24430 - lysine transporter LysE, at 5,516,099 to 5,516,686 _24430 Position (kb) 5514 5515 5516Strain fitness (log2 ratio) -2 -1 0 1 2at 5513.300 kb on + strand, within AO356_24410at 5513.313 kb on - strand, within AO356_24410at 5513.405 kb on + strandat 5513.405 kb on + strandat 5513.405 kb on + strandat 5513.406 kb on - strandat 5513.406 kb on - strandat 5513.566 kb on + strandat 5513.743 kb on + strand, within AO356_24415at 5513.744 kb on - strand, within AO356_24415at 5513.840 kb on - strand, within AO356_24415at 5514.038 kb on - strand, within AO356_24415at 5514.064 kb on + strand, within AO356_24415at 5514.065 kb on - strand, within AO356_24415at 5514.420 kb on + strand, within AO356_24420at 5514.420 kb on + strand, within AO356_24420at 5514.497 kb on + strand, within AO356_24420at 5514.497 kb on + strand, within AO356_24420at 5514.594 kb on + strand, within AO356_24420at 5514.594 kb on + strand, within AO356_24420at 5514.955 kb on + strand, within AO356_24420at 5515.215 kb on + strandat 5515.216 kb on - strandat 5515.300 kb on + strandat 5515.300 kb on + strandat 5515.300 kb on + strandat 5515.300 kb on + strandat 5515.301 kb on - strandat 5515.301 kb on - strandat 5515.301 kb on - strandat 5515.447 kb on - strandat 5515.447 kb on - strandat 5515.447 kb on - strandat 5515.656 kb on + strand, within AO356_24425at 5515.657 kb on - strand, within AO356_24425at 5516.059 kb on + strandat 5516.059 kb on + strandat 5516.059 kb on + strandat 5516.060 kb on - strandat 5516.060 kb on - strandat 5516.060 kb on - strandat 5516.082 kb on + strandat 5516.082 kb on + strandat 5516.082 kb on + strandat 5516.082 kb on + strandat 5516.082 kb on + strandat 5516.083 kb on - strandat 5516.147 kb on - strandat 5516.147 kb on - strandat 5516.286 kb on + strand, within AO356_24430at 5516.286 kb on + strand, within AO356_24430at 5516.286 kb on + strand, within AO356_24430at 5516.286 kb on + strand, within AO356_24430

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 360 hrs
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5,513,300 + AO356_24410 0.83 +0.4
5,513,313 - AO356_24410 0.86 -0.8
5,513,405 + +0.5
5,513,405 + +0.1
5,513,405 + +0.9
5,513,406 - -0.9
5,513,406 - -0.3
5,513,566 + +0.0
5,513,743 + AO356_24415 0.29 -0.3
5,513,744 - AO356_24415 0.29 +1.2
5,513,840 - AO356_24415 0.44 +1.6
5,514,038 - AO356_24415 0.77 -0.6
5,514,064 + AO356_24415 0.81 +0.6
5,514,065 - AO356_24415 0.81 +0.0
5,514,420 + AO356_24420 0.20 -0.6
5,514,420 + AO356_24420 0.20 -0.7
5,514,497 + AO356_24420 0.27 +0.8
5,514,497 + AO356_24420 0.27 +0.8
5,514,594 + AO356_24420 0.36 +0.0
5,514,594 + AO356_24420 0.36 -0.2
5,514,955 + AO356_24420 0.69 +0.5
5,515,215 + +0.3
5,515,216 - +0.7
5,515,300 + -0.2
5,515,300 + +0.3
5,515,300 + -0.4
5,515,300 + -0.2
5,515,301 - -0.6
5,515,301 - +0.1
5,515,301 - -0.5
5,515,447 - +1.8
5,515,447 - +0.3
5,515,447 - -0.9
5,515,656 + AO356_24425 0.45 +0.0
5,515,657 - AO356_24425 0.45 -0.3
5,516,059 + +1.4
5,516,059 + -2.3
5,516,059 + +1.2
5,516,060 - +0.0
5,516,060 - -0.2
5,516,060 - +1.6
5,516,082 + +1.2
5,516,082 + -0.3
5,516,082 + +0.1
5,516,082 + +0.2
5,516,082 + +0.4
5,516,083 - +0.9
5,516,147 - -1.0
5,516,147 - -1.4
5,516,286 + AO356_24430 0.32 +0.7
5,516,286 + AO356_24430 0.32 +0.5
5,516,286 + AO356_24430 0.32 -0.4
5,516,286 + AO356_24430 0.32 -0.7

Or see this region's nucleotide sequence