Experiment: 4C survival; 360 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22655 and AO356_22660 overlap by 4 nucleotides AO356_22660 and AO356_22665 are separated by 39 nucleotides AO356_22665 and AO356_22670 are separated by 33 nucleotides
AO356_22655: AO356_22655 - SAM-dependent methyltransferase, at 5,062,288 to 5,063,124
_22655
AO356_22660: AO356_22660 - chemotaxis protein CheW, at 5,063,121 to 5,063,657
_22660
AO356_22665: AO356_22665 - chemotaxis protein, at 5,063,697 to 5,065,355
_22665
AO356_22670: AO356_22670 - chemotaxis protein CheA, at 5,065,389 to 5,067,491
_22670
Position (kb)
5063
5064
5065
5066 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5062.741 kb on - strand, within AO356_22655 at 5062.741 kb on - strand, within AO356_22655 at 5062.742 kb on + strand, within AO356_22655 at 5062.742 kb on + strand, within AO356_22655 at 5062.742 kb on + strand, within AO356_22655 at 5062.743 kb on - strand, within AO356_22655 at 5062.743 kb on - strand, within AO356_22655 at 5062.743 kb on - strand, within AO356_22655 at 5062.813 kb on + strand, within AO356_22655 at 5062.813 kb on + strand, within AO356_22655 at 5062.814 kb on - strand, within AO356_22655 at 5062.814 kb on - strand, within AO356_22655 at 5062.814 kb on - strand, within AO356_22655 at 5062.814 kb on - strand, within AO356_22655 at 5062.897 kb on + strand, within AO356_22655 at 5062.897 kb on + strand, within AO356_22655 at 5062.898 kb on - strand, within AO356_22655 at 5062.898 kb on - strand, within AO356_22655 at 5062.937 kb on + strand, within AO356_22655 at 5062.938 kb on - strand, within AO356_22655 at 5063.113 kb on - strand at 5063.113 kb on - strand at 5063.588 kb on + strand, within AO356_22660 at 5063.589 kb on - strand, within AO356_22660 at 5063.599 kb on + strand, within AO356_22660 at 5063.599 kb on + strand, within AO356_22660 at 5063.599 kb on + strand, within AO356_22660 at 5063.600 kb on - strand, within AO356_22660 at 5063.600 kb on - strand, within AO356_22660 at 5063.600 kb on - strand, within AO356_22660 at 5063.672 kb on + strand at 5063.673 kb on - strand at 5063.673 kb on - strand at 5063.744 kb on - strand at 5063.866 kb on + strand, within AO356_22665 at 5064.552 kb on - strand, within AO356_22665 at 5064.979 kb on + strand, within AO356_22665 at 5064.980 kb on - strand, within AO356_22665 at 5065.049 kb on - strand, within AO356_22665 at 5065.049 kb on - strand, within AO356_22665 at 5065.334 kb on + strand at 5065.334 kb on + strand at 5065.335 kb on - strand at 5065.335 kb on - strand at 5065.335 kb on - strand at 5065.335 kb on - strand at 5065.342 kb on + strand at 5065.343 kb on - strand at 5065.343 kb on - strand at 5065.343 kb on - strand at 5065.343 kb on - strand at 5065.343 kb on - strand at 5065.363 kb on + strand at 5065.363 kb on + strand at 5065.363 kb on + strand at 5065.363 kb on + strand at 5065.364 kb on - strand at 5065.364 kb on - strand at 5065.364 kb on - strand at 5065.382 kb on + strand at 5065.382 kb on + strand at 5065.382 kb on + strand at 5065.382 kb on + strand at 5065.382 kb on + strand at 5065.410 kb on + strand at 5065.410 kb on + strand at 5065.410 kb on + strand at 5065.411 kb on - strand at 5065.411 kb on - strand at 5065.411 kb on - strand at 5065.411 kb on - strand at 5065.468 kb on - strand at 5065.766 kb on + strand, within AO356_22670 at 5065.767 kb on - strand, within AO356_22670 at 5065.798 kb on + strand, within AO356_22670 at 5065.798 kb on + strand, within AO356_22670 at 5065.798 kb on + strand, within AO356_22670 at 5065.798 kb on + strand, within AO356_22670 at 5065.798 kb on + strand, within AO356_22670 at 5065.798 kb on + strand, within AO356_22670 at 5065.799 kb on - strand, within AO356_22670 at 5066.017 kb on + strand, within AO356_22670 at 5066.018 kb on - strand, within AO356_22670 at 5066.018 kb on - strand, within AO356_22670 at 5066.150 kb on - strand, within AO356_22670 at 5066.150 kb on - strand, within AO356_22670 at 5066.214 kb on + strand, within AO356_22670 at 5066.215 kb on - strand, within AO356_22670 at 5066.215 kb on - strand, within AO356_22670
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 360 hrs remove 5,062,741 - AO356_22655 0.54 -0.0 5,062,741 - AO356_22655 0.54 +0.2 5,062,742 + AO356_22655 0.54 -0.1 5,062,742 + AO356_22655 0.54 -0.6 5,062,742 + AO356_22655 0.54 -0.0 5,062,743 - AO356_22655 0.54 +0.4 5,062,743 - AO356_22655 0.54 +0.3 5,062,743 - AO356_22655 0.54 -0.3 5,062,813 + AO356_22655 0.63 +0.2 5,062,813 + AO356_22655 0.63 -0.7 5,062,814 - AO356_22655 0.63 +0.8 5,062,814 - AO356_22655 0.63 +0.4 5,062,814 - AO356_22655 0.63 -0.0 5,062,814 - AO356_22655 0.63 +0.0 5,062,897 + AO356_22655 0.73 -0.3 5,062,897 + AO356_22655 0.73 +0.6 5,062,898 - AO356_22655 0.73 +0.4 5,062,898 - AO356_22655 0.73 +0.4 5,062,937 + AO356_22655 0.78 +0.0 5,062,938 - AO356_22655 0.78 +0.6 5,063,113 - -1.2 5,063,113 - +0.7 5,063,588 + AO356_22660 0.87 -0.5 5,063,589 - AO356_22660 0.87 +0.7 5,063,599 + AO356_22660 0.89 +0.2 5,063,599 + AO356_22660 0.89 -0.1 5,063,599 + AO356_22660 0.89 +0.2 5,063,600 - AO356_22660 0.89 -0.1 5,063,600 - AO356_22660 0.89 -0.2 5,063,600 - AO356_22660 0.89 -0.2 5,063,672 + -0.4 5,063,673 - +0.7 5,063,673 - +0.2 5,063,744 - +0.2 5,063,866 + AO356_22665 0.10 +0.7 5,064,552 - AO356_22665 0.52 -1.8 5,064,979 + AO356_22665 0.77 +0.2 5,064,980 - AO356_22665 0.77 -0.0 5,065,049 - AO356_22665 0.81 -0.3 5,065,049 - AO356_22665 0.81 +0.3 5,065,334 + +0.2 5,065,334 + +0.2 5,065,335 - +0.1 5,065,335 - +0.2 5,065,335 - -0.8 5,065,335 - +0.4 5,065,342 + -0.4 5,065,343 - -0.1 5,065,343 - -0.8 5,065,343 - -0.5 5,065,343 - -0.9 5,065,343 - -1.4 5,065,363 + -2.3 5,065,363 + -0.4 5,065,363 + -1.7 5,065,363 + -0.3 5,065,364 - -0.8 5,065,364 - -0.4 5,065,364 - +0.1 5,065,382 + +0.7 5,065,382 + -0.1 5,065,382 + -0.9 5,065,382 + -0.1 5,065,382 + -0.1 5,065,410 + -0.8 5,065,410 + +1.7 5,065,410 + +0.4 5,065,411 - -0.1 5,065,411 - +0.5 5,065,411 - +0.6 5,065,411 - +0.8 5,065,468 - -0.1 5,065,766 + AO356_22670 0.18 +0.7 5,065,767 - AO356_22670 0.18 +0.7 5,065,798 + AO356_22670 0.19 -1.6 5,065,798 + AO356_22670 0.19 +0.2 5,065,798 + AO356_22670 0.19 -1.5 5,065,798 + AO356_22670 0.19 +0.1 5,065,798 + AO356_22670 0.19 -0.8 5,065,798 + AO356_22670 0.19 +0.6 5,065,799 - AO356_22670 0.19 +0.3 5,066,017 + AO356_22670 0.30 -0.7 5,066,018 - AO356_22670 0.30 -0.0 5,066,018 - AO356_22670 0.30 +1.1 5,066,150 - AO356_22670 0.36 +2.3 5,066,150 - AO356_22670 0.36 -0.4 5,066,214 + AO356_22670 0.39 -2.1 5,066,215 - AO356_22670 0.39 +0.4 5,066,215 - AO356_22670 0.39 +0.1
Or see this region's nucleotide sequence