Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16380

Experiment: 4C survival; 360 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16370 and AO356_16375 are separated by 48 nucleotidesAO356_16375 and AO356_16380 overlap by 1 nucleotidesAO356_16380 and AO356_16385 are separated by 112 nucleotides AO356_16370: AO356_16370 - hypothetical protein, at 3,699,364 to 3,700,089 _16370 AO356_16375: AO356_16375 - hypothetical protein, at 3,700,138 to 3,701,064 _16375 AO356_16380: AO356_16380 - hypothetical protein, at 3,701,064 to 3,701,420 _16380 AO356_16385: AO356_16385 - transcriptional regulator, at 3,701,533 to 3,702,447 _16385 Position (kb) 3701 3702Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3700.279 kb on - strand, within AO356_16375at 3700.337 kb on - strand, within AO356_16375at 3700.620 kb on + strand, within AO356_16375at 3700.620 kb on + strand, within AO356_16375at 3700.621 kb on - strand, within AO356_16375at 3700.621 kb on - strand, within AO356_16375at 3700.870 kb on + strand, within AO356_16375at 3700.870 kb on + strand, within AO356_16375at 3700.870 kb on + strand, within AO356_16375at 3700.870 kb on + strand, within AO356_16375at 3700.871 kb on - strand, within AO356_16375at 3700.951 kb on + strand, within AO356_16375at 3700.951 kb on + strand, within AO356_16375at 3700.951 kb on + strand, within AO356_16375at 3700.952 kb on - strand, within AO356_16375at 3701.244 kb on + strand, within AO356_16380at 3701.244 kb on + strand, within AO356_16380at 3701.244 kb on + strand, within AO356_16380at 3701.244 kb on + strand, within AO356_16380at 3701.244 kb on + strand, within AO356_16380at 3701.245 kb on - strand, within AO356_16380at 3701.245 kb on - strand, within AO356_16380at 3701.245 kb on - strand, within AO356_16380at 3701.290 kb on + strand, within AO356_16380at 3701.291 kb on - strand, within AO356_16380at 3701.344 kb on + strand, within AO356_16380at 3701.344 kb on + strand, within AO356_16380at 3701.344 kb on + strand, within AO356_16380at 3701.344 kb on + strand, within AO356_16380at 3701.344 kb on + strand, within AO356_16380at 3701.344 kb on + strand, within AO356_16380at 3701.344 kb on + strand, within AO356_16380at 3701.344 kb on + strand, within AO356_16380at 3701.344 kb on + strand, within AO356_16380at 3701.345 kb on - strand, within AO356_16380at 3701.345 kb on - strand, within AO356_16380at 3701.345 kb on - strand, within AO356_16380at 3701.345 kb on - strand, within AO356_16380at 3701.345 kb on - strand, within AO356_16380at 3701.345 kb on - strand, within AO356_16380at 3701.350 kb on + strand, within AO356_16380at 3701.350 kb on + strand, within AO356_16380at 3701.350 kb on + strand, within AO356_16380at 3701.350 kb on + strand, within AO356_16380at 3701.350 kb on + strand, within AO356_16380at 3701.350 kb on + strand, within AO356_16380at 3701.350 kb on + strand, within AO356_16380at 3701.350 kb on + strand, within AO356_16380at 3701.350 kb on + strand, within AO356_16380at 3701.350 kb on + strand, within AO356_16380at 3701.351 kb on - strand, within AO356_16380at 3701.351 kb on - strand, within AO356_16380at 3701.351 kb on - strand, within AO356_16380at 3701.351 kb on - strand, within AO356_16380at 3701.351 kb on - strand, within AO356_16380at 3701.351 kb on - strand, within AO356_16380at 3701.351 kb on - strand, within AO356_16380at 3701.351 kb on - strand, within AO356_16380at 3701.351 kb on - strand, within AO356_16380at 3701.351 kb on - strand, within AO356_16380at 3701.414 kb on + strandat 3701.414 kb on + strandat 3701.415 kb on - strandat 3701.415 kb on - strandat 3701.415 kb on - strandat 3701.415 kb on - strandat 3701.415 kb on - strandat 3701.415 kb on - strandat 3701.415 kb on - strandat 3701.415 kb on - strandat 3701.472 kb on - strandat 3701.514 kb on - strandat 3701.531 kb on - strandat 3701.703 kb on + strand, within AO356_16385at 3701.703 kb on + strand, within AO356_16385at 3701.703 kb on + strand, within AO356_16385at 3701.703 kb on + strand, within AO356_16385at 3701.703 kb on + strand, within AO356_16385at 3701.704 kb on - strand, within AO356_16385at 3701.704 kb on - strand, within AO356_16385at 3701.704 kb on - strand, within AO356_16385at 3701.704 kb on - strand, within AO356_16385at 3701.704 kb on - strand, within AO356_16385at 3701.734 kb on + strand, within AO356_16385at 3701.734 kb on + strand, within AO356_16385at 3701.734 kb on + strand, within AO356_16385at 3701.735 kb on - strand, within AO356_16385at 3702.062 kb on + strand, within AO356_16385at 3702.062 kb on + strand, within AO356_16385at 3702.063 kb on - strand, within AO356_16385at 3702.069 kb on + strand, within AO356_16385at 3702.307 kb on + strand, within AO356_16385at 3702.307 kb on + strand, within AO356_16385at 3702.403 kb on + strandat 3702.404 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 360 hrs
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3,700,279 - AO356_16375 0.15 -2.1
3,700,337 - AO356_16375 0.21 -1.6
3,700,620 + AO356_16375 0.52 +0.1
3,700,620 + AO356_16375 0.52 +0.4
3,700,621 - AO356_16375 0.52 -0.3
3,700,621 - AO356_16375 0.52 +0.4
3,700,870 + AO356_16375 0.79 -0.8
3,700,870 + AO356_16375 0.79 -1.0
3,700,870 + AO356_16375 0.79 -0.9
3,700,870 + AO356_16375 0.79 +0.7
3,700,871 - AO356_16375 0.79 +1.3
3,700,951 + AO356_16375 0.88 -0.8
3,700,951 + AO356_16375 0.88 +1.0
3,700,951 + AO356_16375 0.88 +0.3
3,700,952 - AO356_16375 0.88 -0.0
3,701,244 + AO356_16380 0.50 +0.8
3,701,244 + AO356_16380 0.50 -0.3
3,701,244 + AO356_16380 0.50 +0.4
3,701,244 + AO356_16380 0.50 -0.5
3,701,244 + AO356_16380 0.50 +1.0
3,701,245 - AO356_16380 0.51 +0.1
3,701,245 - AO356_16380 0.51 +0.2
3,701,245 - AO356_16380 0.51 -0.3
3,701,290 + AO356_16380 0.63 -0.2
3,701,291 - AO356_16380 0.64 -1.3
3,701,344 + AO356_16380 0.78 -1.1
3,701,344 + AO356_16380 0.78 +1.0
3,701,344 + AO356_16380 0.78 +0.4
3,701,344 + AO356_16380 0.78 +0.6
3,701,344 + AO356_16380 0.78 +1.0
3,701,344 + AO356_16380 0.78 -0.5
3,701,344 + AO356_16380 0.78 -0.2
3,701,344 + AO356_16380 0.78 -0.6
3,701,344 + AO356_16380 0.78 +0.3
3,701,345 - AO356_16380 0.79 -1.0
3,701,345 - AO356_16380 0.79 -0.8
3,701,345 - AO356_16380 0.79 -1.1
3,701,345 - AO356_16380 0.79 +0.1
3,701,345 - AO356_16380 0.79 -0.1
3,701,345 - AO356_16380 0.79 -0.0
3,701,350 + AO356_16380 0.80 +0.7
3,701,350 + AO356_16380 0.80 +0.3
3,701,350 + AO356_16380 0.80 -1.0
3,701,350 + AO356_16380 0.80 -1.7
3,701,350 + AO356_16380 0.80 +2.8
3,701,350 + AO356_16380 0.80 -0.3
3,701,350 + AO356_16380 0.80 -0.0
3,701,350 + AO356_16380 0.80 -1.3
3,701,350 + AO356_16380 0.80 +0.8
3,701,350 + AO356_16380 0.80 -0.5
3,701,351 - AO356_16380 0.80 +0.4
3,701,351 - AO356_16380 0.80 +0.4
3,701,351 - AO356_16380 0.80 -0.0
3,701,351 - AO356_16380 0.80 +0.6
3,701,351 - AO356_16380 0.80 +1.1
3,701,351 - AO356_16380 0.80 +0.0
3,701,351 - AO356_16380 0.80 -0.2
3,701,351 - AO356_16380 0.80 +0.2
3,701,351 - AO356_16380 0.80 +0.3
3,701,351 - AO356_16380 0.80 -0.6
3,701,414 + -0.5
3,701,414 + +0.1
3,701,415 - -0.3
3,701,415 - -0.9
3,701,415 - -0.1
3,701,415 - +2.1
3,701,415 - +0.2
3,701,415 - +1.0
3,701,415 - -0.6
3,701,415 - +1.0
3,701,472 - -1.5
3,701,514 - +0.2
3,701,531 - +1.2
3,701,703 + AO356_16385 0.19 +0.4
3,701,703 + AO356_16385 0.19 -1.0
3,701,703 + AO356_16385 0.19 -1.3
3,701,703 + AO356_16385 0.19 -1.5
3,701,703 + AO356_16385 0.19 +0.4
3,701,704 - AO356_16385 0.19 -0.7
3,701,704 - AO356_16385 0.19 -0.4
3,701,704 - AO356_16385 0.19 -0.5
3,701,704 - AO356_16385 0.19 -0.3
3,701,704 - AO356_16385 0.19 -0.3
3,701,734 + AO356_16385 0.22 +0.8
3,701,734 + AO356_16385 0.22 -0.1
3,701,734 + AO356_16385 0.22 -0.5
3,701,735 - AO356_16385 0.22 -1.7
3,702,062 + AO356_16385 0.58 +0.2
3,702,062 + AO356_16385 0.58 +0.1
3,702,063 - AO356_16385 0.58 -0.8
3,702,069 + AO356_16385 0.59 -0.5
3,702,307 + AO356_16385 0.85 -0.1
3,702,307 + AO356_16385 0.85 -0.8
3,702,403 + -0.9
3,702,404 - -1.3

Or see this region's nucleotide sequence