Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16265

Experiment: 4C survival; 360 hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_16255 and AO356_16260 overlap by 8 nucleotidesAO356_16260 and AO356_16265 are separated by 316 nucleotidesAO356_16265 and AO356_16270 are separated by 132 nucleotidesAO356_16270 and AO356_16275 are separated by 10 nucleotides AO356_16255: AO356_16255 - energy transducer TonB, at 3,676,266 to 3,677,006 _16255 AO356_16260: AO356_16260 - ribosomal-protein-alanine acetyltransferase, at 3,676,999 to 3,677,451 _16260 AO356_16265: AO356_16265 - serine kinase/phosphatase, at 3,677,768 to 3,678,172 _16265 AO356_16270: AO356_16270 - carbonate dehydratase, at 3,678,305 to 3,678,949 _16270 AO356_16275: AO356_16275 - lysine methyltransferase, at 3,678,960 to 3,679,487 _16275 Position (kb) 3677 3678 3679Strain fitness (log2 ratio) -2 -1 0 1 2at 3677.012 kb on + strandat 3677.012 kb on + strandat 3677.012 kb on + strandat 3677.052 kb on - strand, within AO356_16260at 3677.075 kb on - strand, within AO356_16260at 3677.075 kb on - strand, within AO356_16260at 3677.099 kb on + strand, within AO356_16260at 3677.099 kb on + strand, within AO356_16260at 3677.099 kb on + strand, within AO356_16260at 3677.122 kb on + strand, within AO356_16260at 3677.123 kb on - strand, within AO356_16260at 3677.281 kb on + strand, within AO356_16260at 3677.282 kb on - strand, within AO356_16260at 3677.282 kb on - strand, within AO356_16260at 3677.347 kb on + strand, within AO356_16260at 3677.347 kb on + strand, within AO356_16260at 3677.347 kb on + strand, within AO356_16260at 3677.347 kb on + strand, within AO356_16260at 3677.348 kb on - strand, within AO356_16260at 3677.348 kb on - strand, within AO356_16260at 3677.348 kb on - strand, within AO356_16260at 3677.348 kb on - strand, within AO356_16260at 3677.348 kb on - strand, within AO356_16260at 3677.357 kb on - strand, within AO356_16260at 3677.389 kb on + strand, within AO356_16260at 3677.389 kb on + strand, within AO356_16260at 3677.392 kb on + strand, within AO356_16260at 3677.499 kb on + strandat 3677.499 kb on + strandat 3677.500 kb on - strandat 3677.500 kb on - strandat 3677.501 kb on + strandat 3677.502 kb on - strandat 3677.502 kb on - strandat 3677.502 kb on - strandat 3677.502 kb on - strandat 3677.502 kb on - strandat 3677.502 kb on - strandat 3677.629 kb on + strandat 3677.629 kb on + strandat 3677.629 kb on + strandat 3677.629 kb on + strandat 3677.629 kb on + strandat 3677.630 kb on - strandat 3678.185 kb on + strandat 3678.185 kb on + strandat 3678.185 kb on + strandat 3678.186 kb on - strandat 3678.186 kb on - strandat 3678.186 kb on - strandat 3678.186 kb on - strandat 3678.186 kb on - strandat 3678.186 kb on - strandat 3678.186 kb on - strandat 3678.198 kb on - strandat 3678.198 kb on - strandat 3678.198 kb on - strandat 3678.230 kb on - strandat 3678.288 kb on + strandat 3678.298 kb on - strandat 3678.315 kb on + strandat 3678.315 kb on + strandat 3678.315 kb on + strandat 3678.316 kb on - strandat 3678.331 kb on + strandat 3678.331 kb on + strandat 3678.331 kb on + strandat 3678.332 kb on - strandat 3678.332 kb on - strandat 3678.332 kb on - strandat 3678.413 kb on + strand, within AO356_16270at 3678.413 kb on + strand, within AO356_16270at 3678.414 kb on - strand, within AO356_16270at 3678.551 kb on + strand, within AO356_16270at 3678.551 kb on + strand, within AO356_16270at 3678.599 kb on + strand, within AO356_16270at 3678.683 kb on + strand, within AO356_16270at 3678.683 kb on + strand, within AO356_16270at 3678.683 kb on + strand, within AO356_16270at 3678.684 kb on - strand, within AO356_16270at 3678.684 kb on - strand, within AO356_16270at 3678.684 kb on - strand, within AO356_16270at 3678.686 kb on + strand, within AO356_16270at 3678.686 kb on + strand, within AO356_16270at 3678.686 kb on + strand, within AO356_16270at 3678.686 kb on + strand, within AO356_16270at 3678.687 kb on - strand, within AO356_16270at 3678.714 kb on + strand, within AO356_16270at 3678.715 kb on - strand, within AO356_16270at 3678.771 kb on + strand, within AO356_16270at 3678.772 kb on - strand, within AO356_16270at 3678.787 kb on + strand, within AO356_16270at 3678.788 kb on - strand, within AO356_16270at 3678.788 kb on - strand, within AO356_16270at 3678.848 kb on + strand, within AO356_16270at 3678.848 kb on + strand, within AO356_16270at 3678.848 kb on + strand, within AO356_16270at 3678.848 kb on + strand, within AO356_16270at 3678.848 kb on + strand, within AO356_16270at 3678.848 kb on + strand, within AO356_16270at 3678.848 kb on + strand, within AO356_16270at 3678.920 kb on + strandat 3678.994 kb on - strandat 3679.030 kb on + strand, within AO356_16275at 3679.057 kb on + strand, within AO356_16275at 3679.057 kb on + strand, within AO356_16275at 3679.057 kb on + strand, within AO356_16275at 3679.057 kb on + strand, within AO356_16275at 3679.057 kb on + strand, within AO356_16275at 3679.057 kb on + strand, within AO356_16275at 3679.057 kb on + strand, within AO356_16275at 3679.057 kb on + strand, within AO356_16275at 3679.058 kb on - strand, within AO356_16275at 3679.058 kb on - strand, within AO356_16275at 3679.058 kb on - strand, within AO356_16275at 3679.058 kb on - strand, within AO356_16275at 3679.058 kb on - strand, within AO356_16275at 3679.058 kb on - strand, within AO356_16275at 3679.087 kb on + strand, within AO356_16275at 3679.111 kb on + strand, within AO356_16275at 3679.111 kb on + strand, within AO356_16275at 3679.112 kb on - strand, within AO356_16275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 360 hrs
remove
3,677,012 + -0.1
3,677,012 + -1.0
3,677,012 + +0.2
3,677,052 - AO356_16260 0.12 +1.1
3,677,075 - AO356_16260 0.17 +0.1
3,677,075 - AO356_16260 0.17 -0.1
3,677,099 + AO356_16260 0.22 +1.2
3,677,099 + AO356_16260 0.22 -0.2
3,677,099 + AO356_16260 0.22 -1.0
3,677,122 + AO356_16260 0.27 -1.9
3,677,123 - AO356_16260 0.27 +1.1
3,677,281 + AO356_16260 0.62 +1.0
3,677,282 - AO356_16260 0.62 -0.5
3,677,282 - AO356_16260 0.62 +1.5
3,677,347 + AO356_16260 0.77 -1.0
3,677,347 + AO356_16260 0.77 -1.2
3,677,347 + AO356_16260 0.77 -0.6
3,677,347 + AO356_16260 0.77 -0.3
3,677,348 - AO356_16260 0.77 -1.1
3,677,348 - AO356_16260 0.77 +0.6
3,677,348 - AO356_16260 0.77 -0.1
3,677,348 - AO356_16260 0.77 -1.4
3,677,348 - AO356_16260 0.77 -0.0
3,677,357 - AO356_16260 0.79 -1.0
3,677,389 + AO356_16260 0.86 -0.5
3,677,389 + AO356_16260 0.86 +0.0
3,677,392 + AO356_16260 0.87 +0.0
3,677,499 + +0.2
3,677,499 + +0.5
3,677,500 - +1.0
3,677,500 - -0.3
3,677,501 + +0.6
3,677,502 - +0.3
3,677,502 - -0.2
3,677,502 - +0.1
3,677,502 - -0.6
3,677,502 - +0.6
3,677,502 - +1.1
3,677,629 + +1.4
3,677,629 + -0.8
3,677,629 + +0.5
3,677,629 + -1.7
3,677,629 + -0.7
3,677,630 - +0.5
3,678,185 + +0.7
3,678,185 + +0.4
3,678,185 + -1.1
3,678,186 - +0.1
3,678,186 - -0.8
3,678,186 - -0.8
3,678,186 - -0.3
3,678,186 - -0.9
3,678,186 - +0.1
3,678,186 - +0.4
3,678,198 - -0.9
3,678,198 - +0.9
3,678,198 - +1.2
3,678,230 - -0.3
3,678,288 + +0.9
3,678,298 - +0.1
3,678,315 + -0.9
3,678,315 + +2.2
3,678,315 + +0.3
3,678,316 - -0.3
3,678,331 + -1.6
3,678,331 + -0.2
3,678,331 + -0.3
3,678,332 - +0.1
3,678,332 - +0.2
3,678,332 - +0.8
3,678,413 + AO356_16270 0.17 -0.7
3,678,413 + AO356_16270 0.17 +0.2
3,678,414 - AO356_16270 0.17 +0.8
3,678,551 + AO356_16270 0.38 +1.1
3,678,551 + AO356_16270 0.38 -0.5
3,678,599 + AO356_16270 0.46 -0.3
3,678,683 + AO356_16270 0.59 +0.7
3,678,683 + AO356_16270 0.59 -0.1
3,678,683 + AO356_16270 0.59 -0.1
3,678,684 - AO356_16270 0.59 +0.6
3,678,684 - AO356_16270 0.59 -1.0
3,678,684 - AO356_16270 0.59 +0.6
3,678,686 + AO356_16270 0.59 -1.0
3,678,686 + AO356_16270 0.59 +0.2
3,678,686 + AO356_16270 0.59 -0.6
3,678,686 + AO356_16270 0.59 +0.6
3,678,687 - AO356_16270 0.59 -2.0
3,678,714 + AO356_16270 0.63 -1.0
3,678,715 - AO356_16270 0.64 -0.4
3,678,771 + AO356_16270 0.72 -0.9
3,678,772 - AO356_16270 0.72 -0.2
3,678,787 + AO356_16270 0.75 +1.1
3,678,788 - AO356_16270 0.75 +0.2
3,678,788 - AO356_16270 0.75 -0.1
3,678,848 + AO356_16270 0.84 +0.2
3,678,848 + AO356_16270 0.84 -0.1
3,678,848 + AO356_16270 0.84 +0.2
3,678,848 + AO356_16270 0.84 +1.2
3,678,848 + AO356_16270 0.84 +0.6
3,678,848 + AO356_16270 0.84 -0.9
3,678,848 + AO356_16270 0.84 +0.4
3,678,920 + +0.3
3,678,994 - +0.3
3,679,030 + AO356_16275 0.13 -0.2
3,679,057 + AO356_16275 0.18 +0.1
3,679,057 + AO356_16275 0.18 -1.4
3,679,057 + AO356_16275 0.18 +0.4
3,679,057 + AO356_16275 0.18 +1.2
3,679,057 + AO356_16275 0.18 +0.2
3,679,057 + AO356_16275 0.18 -0.2
3,679,057 + AO356_16275 0.18 -0.2
3,679,057 + AO356_16275 0.18 -1.3
3,679,058 - AO356_16275 0.19 +0.7
3,679,058 - AO356_16275 0.19 -0.4
3,679,058 - AO356_16275 0.19 +0.3
3,679,058 - AO356_16275 0.19 +1.1
3,679,058 - AO356_16275 0.19 -0.0
3,679,058 - AO356_16275 0.19 +0.5
3,679,087 + AO356_16275 0.24 +0.2
3,679,111 + AO356_16275 0.29 -0.1
3,679,111 + AO356_16275 0.29 -0.7
3,679,112 - AO356_16275 0.29 +0.2

Or see this region's nucleotide sequence