Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14075

Experiment: 4C survival; 360 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14070 and AO356_14075 are separated by 231 nucleotidesAO356_14075 and AO356_14080 overlap by 4 nucleotidesAO356_14080 and AO356_14085 are separated by 226 nucleotides AO356_14070: AO356_14070 - TonB-dependent receptor, at 3,192,773 to 3,195,211 _14070 AO356_14075: AO356_14075 - amino acid ABC transporter substrate-binding protein, at 3,195,443 to 3,196,414 _14075 AO356_14080: AO356_14080 - RNA polymerase subunit sigma, at 3,196,411 to 3,196,929 _14080 AO356_14085: AO356_14085 - DNA polymerase III subunit epsilon, at 3,197,156 to 3,197,863 _14085 Position (kb) 3195 3196 3197Strain fitness (log2 ratio) -2 -1 0 1 2at 3194.544 kb on + strand, within AO356_14070at 3194.544 kb on + strand, within AO356_14070at 3194.544 kb on + strand, within AO356_14070at 3194.544 kb on + strand, within AO356_14070at 3194.544 kb on + strand, within AO356_14070at 3194.544 kb on + strand, within AO356_14070at 3194.544 kb on + strand, within AO356_14070at 3194.544 kb on + strand, within AO356_14070at 3194.545 kb on - strand, within AO356_14070at 3194.545 kb on - strand, within AO356_14070at 3194.545 kb on - strand, within AO356_14070at 3194.545 kb on - strand, within AO356_14070at 3194.545 kb on - strand, within AO356_14070at 3194.545 kb on - strand, within AO356_14070at 3194.589 kb on - strand, within AO356_14070at 3194.661 kb on + strand, within AO356_14070at 3194.662 kb on - strand, within AO356_14070at 3194.662 kb on - strand, within AO356_14070at 3194.662 kb on - strand, within AO356_14070at 3194.662 kb on - strand, within AO356_14070at 3194.793 kb on + strand, within AO356_14070at 3194.793 kb on + strand, within AO356_14070at 3194.793 kb on + strand, within AO356_14070at 3194.793 kb on + strand, within AO356_14070at 3194.793 kb on + strand, within AO356_14070at 3194.793 kb on + strand, within AO356_14070at 3194.793 kb on + strand, within AO356_14070at 3194.793 kb on + strand, within AO356_14070at 3194.793 kb on + strand, within AO356_14070at 3194.794 kb on - strand, within AO356_14070at 3194.794 kb on - strand, within AO356_14070at 3194.794 kb on - strand, within AO356_14070at 3194.794 kb on - strand, within AO356_14070at 3194.794 kb on - strand, within AO356_14070at 3194.794 kb on - strand, within AO356_14070at 3194.794 kb on - strand, within AO356_14070at 3194.794 kb on - strand, within AO356_14070at 3194.794 kb on - strand, within AO356_14070at 3194.794 kb on - strand, within AO356_14070at 3194.794 kb on - strand, within AO356_14070at 3194.794 kb on - strand, within AO356_14070at 3194.794 kb on - strand, within AO356_14070at 3194.892 kb on + strand, within AO356_14070at 3194.892 kb on + strand, within AO356_14070at 3194.893 kb on - strand, within AO356_14070at 3194.893 kb on - strand, within AO356_14070at 3194.893 kb on - strand, within AO356_14070at 3194.893 kb on - strand, within AO356_14070at 3195.090 kb on + strandat 3195.090 kb on + strandat 3195.090 kb on + strandat 3195.090 kb on + strandat 3195.091 kb on - strandat 3195.091 kb on - strandat 3195.091 kb on - strandat 3195.091 kb on - strandat 3195.091 kb on - strandat 3195.198 kb on - strandat 3195.211 kb on + strandat 3195.211 kb on + strandat 3195.211 kb on + strandat 3195.211 kb on + strandat 3195.212 kb on - strandat 3195.212 kb on - strandat 3195.212 kb on - strandat 3195.212 kb on - strandat 3195.212 kb on - strandat 3195.212 kb on - strandat 3195.212 kb on - strandat 3195.212 kb on - strandat 3195.277 kb on - strandat 3195.297 kb on + strandat 3196.089 kb on + strand, within AO356_14075at 3196.089 kb on + strand, within AO356_14075at 3196.427 kb on + strandat 3196.427 kb on + strandat 3196.428 kb on - strandat 3196.439 kb on + strandat 3196.439 kb on + strandat 3196.439 kb on + strandat 3196.439 kb on + strandat 3196.439 kb on + strandat 3196.439 kb on + strandat 3196.439 kb on + strandat 3196.439 kb on + strandat 3196.439 kb on + strandat 3196.439 kb on + strandat 3196.440 kb on - strandat 3196.440 kb on - strandat 3196.440 kb on - strandat 3196.440 kb on - strandat 3196.440 kb on - strandat 3196.440 kb on - strandat 3196.466 kb on + strand, within AO356_14080at 3196.466 kb on + strand, within AO356_14080at 3196.466 kb on + strand, within AO356_14080at 3196.467 kb on - strand, within AO356_14080at 3196.467 kb on - strand, within AO356_14080at 3196.541 kb on + strand, within AO356_14080at 3196.541 kb on + strand, within AO356_14080at 3196.541 kb on + strand, within AO356_14080at 3196.541 kb on + strand, within AO356_14080at 3196.541 kb on + strand, within AO356_14080at 3196.541 kb on + strand, within AO356_14080at 3196.541 kb on + strand, within AO356_14080at 3196.542 kb on - strand, within AO356_14080at 3196.542 kb on - strand, within AO356_14080at 3196.542 kb on - strand, within AO356_14080at 3196.676 kb on + strand, within AO356_14080at 3196.676 kb on + strand, within AO356_14080at 3196.676 kb on + strand, within AO356_14080at 3196.676 kb on + strand, within AO356_14080at 3196.676 kb on + strand, within AO356_14080at 3196.676 kb on + strand, within AO356_14080at 3196.677 kb on - strand, within AO356_14080at 3196.677 kb on - strand, within AO356_14080at 3196.677 kb on - strand, within AO356_14080at 3196.677 kb on - strand, within AO356_14080at 3196.677 kb on - strand, within AO356_14080at 3196.677 kb on - strand, within AO356_14080at 3196.677 kb on - strand, within AO356_14080at 3196.677 kb on - strand, within AO356_14080at 3196.677 kb on - strand, within AO356_14080at 3196.677 kb on - strand, within AO356_14080at 3196.677 kb on - strand, within AO356_14080at 3196.677 kb on - strand, within AO356_14080at 3196.677 kb on - strand, within AO356_14080at 3196.677 kb on - strand, within AO356_14080at 3196.706 kb on + strand, within AO356_14080at 3196.706 kb on + strand, within AO356_14080at 3196.883 kb on + strandat 3196.883 kb on + strandat 3196.883 kb on + strandat 3196.884 kb on - strandat 3196.884 kb on - strandat 3196.914 kb on + strandat 3197.024 kb on + strandat 3197.108 kb on + strandat 3197.108 kb on + strandat 3197.108 kb on + strandat 3197.109 kb on - strandat 3197.109 kb on - strandat 3197.141 kb on + strandat 3197.141 kb on + strandat 3197.141 kb on + strandat 3197.141 kb on + strandat 3197.142 kb on - strandat 3197.142 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 360 hrs
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3,194,544 + AO356_14070 0.73 +0.1
3,194,544 + AO356_14070 0.73 -0.8
3,194,544 + AO356_14070 0.73 +0.4
3,194,544 + AO356_14070 0.73 -0.7
3,194,544 + AO356_14070 0.73 +0.5
3,194,544 + AO356_14070 0.73 +0.8
3,194,544 + AO356_14070 0.73 +0.0
3,194,544 + AO356_14070 0.73 -0.3
3,194,545 - AO356_14070 0.73 -0.5
3,194,545 - AO356_14070 0.73 +1.0
3,194,545 - AO356_14070 0.73 -0.5
3,194,545 - AO356_14070 0.73 +0.1
3,194,545 - AO356_14070 0.73 +1.8
3,194,545 - AO356_14070 0.73 +2.0
3,194,589 - AO356_14070 0.74 +2.0
3,194,661 + AO356_14070 0.77 -0.3
3,194,662 - AO356_14070 0.77 -0.5
3,194,662 - AO356_14070 0.77 -2.0
3,194,662 - AO356_14070 0.77 -0.6
3,194,662 - AO356_14070 0.77 -0.1
3,194,793 + AO356_14070 0.83 +1.3
3,194,793 + AO356_14070 0.83 -1.8
3,194,793 + AO356_14070 0.83 -2.4
3,194,793 + AO356_14070 0.83 -0.6
3,194,793 + AO356_14070 0.83 -2.0
3,194,793 + AO356_14070 0.83 +0.5
3,194,793 + AO356_14070 0.83 -0.5
3,194,793 + AO356_14070 0.83 -0.2
3,194,793 + AO356_14070 0.83 +0.4
3,194,794 - AO356_14070 0.83 +1.2
3,194,794 - AO356_14070 0.83 +0.5
3,194,794 - AO356_14070 0.83 +0.2
3,194,794 - AO356_14070 0.83 +0.5
3,194,794 - AO356_14070 0.83 -0.5
3,194,794 - AO356_14070 0.83 +0.9
3,194,794 - AO356_14070 0.83 +0.4
3,194,794 - AO356_14070 0.83 -0.5
3,194,794 - AO356_14070 0.83 +1.5
3,194,794 - AO356_14070 0.83 +0.1
3,194,794 - AO356_14070 0.83 +0.4
3,194,794 - AO356_14070 0.83 -1.3
3,194,794 - AO356_14070 0.83 -0.2
3,194,892 + AO356_14070 0.87 +0.2
3,194,892 + AO356_14070 0.87 +0.1
3,194,893 - AO356_14070 0.87 -0.3
3,194,893 - AO356_14070 0.87 +0.6
3,194,893 - AO356_14070 0.87 +0.9
3,194,893 - AO356_14070 0.87 -1.4
3,195,090 + -0.1
3,195,090 + +0.5
3,195,090 + +0.2
3,195,090 + +0.5
3,195,091 - +0.3
3,195,091 - -0.0
3,195,091 - +0.4
3,195,091 - -0.2
3,195,091 - +0.8
3,195,198 - -0.5
3,195,211 + +0.5
3,195,211 + +0.6
3,195,211 + -0.8
3,195,211 + +0.2
3,195,212 - +0.5
3,195,212 - +0.1
3,195,212 - +1.1
3,195,212 - +0.5
3,195,212 - +1.2
3,195,212 - +0.6
3,195,212 - +1.7
3,195,212 - +0.1
3,195,277 - -1.1
3,195,297 + +0.2
3,196,089 + AO356_14075 0.66 -1.1
3,196,089 + AO356_14075 0.66 -1.2
3,196,427 + +0.1
3,196,427 + -0.8
3,196,428 - +1.4
3,196,439 + +0.3
3,196,439 + +0.2
3,196,439 + +1.2
3,196,439 + +0.2
3,196,439 + +1.0
3,196,439 + +0.2
3,196,439 + +0.1
3,196,439 + +0.8
3,196,439 + -0.5
3,196,439 + +1.4
3,196,440 - +0.0
3,196,440 - -0.7
3,196,440 - -0.8
3,196,440 - -0.4
3,196,440 - +0.1
3,196,440 - -0.3
3,196,466 + AO356_14080 0.11 +0.4
3,196,466 + AO356_14080 0.11 +0.1
3,196,466 + AO356_14080 0.11 -0.2
3,196,467 - AO356_14080 0.11 -0.2
3,196,467 - AO356_14080 0.11 +0.1
3,196,541 + AO356_14080 0.25 +0.7
3,196,541 + AO356_14080 0.25 +1.4
3,196,541 + AO356_14080 0.25 +1.8
3,196,541 + AO356_14080 0.25 -0.5
3,196,541 + AO356_14080 0.25 +0.6
3,196,541 + AO356_14080 0.25 -0.3
3,196,541 + AO356_14080 0.25 -0.4
3,196,542 - AO356_14080 0.25 +0.1
3,196,542 - AO356_14080 0.25 +0.3
3,196,542 - AO356_14080 0.25 -0.2
3,196,676 + AO356_14080 0.51 -0.0
3,196,676 + AO356_14080 0.51 +0.8
3,196,676 + AO356_14080 0.51 -1.0
3,196,676 + AO356_14080 0.51 +0.6
3,196,676 + AO356_14080 0.51 +0.7
3,196,676 + AO356_14080 0.51 +0.3
3,196,677 - AO356_14080 0.51 +0.2
3,196,677 - AO356_14080 0.51 -0.8
3,196,677 - AO356_14080 0.51 -0.5
3,196,677 - AO356_14080 0.51 +0.7
3,196,677 - AO356_14080 0.51 -0.1
3,196,677 - AO356_14080 0.51 +0.2
3,196,677 - AO356_14080 0.51 +0.3
3,196,677 - AO356_14080 0.51 +0.1
3,196,677 - AO356_14080 0.51 -0.2
3,196,677 - AO356_14080 0.51 +0.3
3,196,677 - AO356_14080 0.51 +0.0
3,196,677 - AO356_14080 0.51 +0.7
3,196,677 - AO356_14080 0.51 -0.2
3,196,677 - AO356_14080 0.51 +2.0
3,196,706 + AO356_14080 0.57 +0.2
3,196,706 + AO356_14080 0.57 -1.0
3,196,883 + -0.6
3,196,883 + +0.1
3,196,883 + -0.3
3,196,884 - +0.7
3,196,884 - +0.9
3,196,914 + -0.7
3,197,024 + +1.0
3,197,108 + -0.4
3,197,108 + +1.6
3,197,108 + -0.4
3,197,109 - -0.5
3,197,109 - +1.5
3,197,141 + -0.7
3,197,141 + +0.6
3,197,141 + -0.5
3,197,141 + -0.4
3,197,142 - -0.2
3,197,142 - +0.7

Or see this region's nucleotide sequence