Experiment: 4C survival; 360 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_13790 and AO356_13795 are separated by 147 nucleotides AO356_13795 and AO356_13800 are separated by 79 nucleotides
AO356_13790: AO356_13790 - choline dehydrogenase, at 3,128,255 to 3,129,958
_13790
AO356_13795: AO356_13795 - betaine-aldehyde dehydrogenase, at 3,130,106 to 3,131,578
_13795
AO356_13800: AO356_13800 - transcriptional repressor BetI, at 3,131,658 to 3,132,278
_13800
Position (kb)
3130
3131
3132 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3129.540 kb on + strand, within AO356_13790 at 3129.540 kb on + strand, within AO356_13790 at 3129.582 kb on + strand, within AO356_13790 at 3129.583 kb on - strand, within AO356_13790 at 3129.583 kb on - strand, within AO356_13790 at 3129.600 kb on + strand, within AO356_13790 at 3129.600 kb on + strand, within AO356_13790 at 3129.601 kb on - strand, within AO356_13790 at 3129.601 kb on - strand, within AO356_13790 at 3129.642 kb on + strand, within AO356_13790 at 3129.643 kb on - strand, within AO356_13790 at 3129.643 kb on - strand, within AO356_13790 at 3129.666 kb on + strand, within AO356_13790 at 3129.666 kb on + strand, within AO356_13790 at 3129.666 kb on + strand, within AO356_13790 at 3129.666 kb on + strand, within AO356_13790 at 3129.666 kb on + strand, within AO356_13790 at 3129.667 kb on - strand, within AO356_13790 at 3129.667 kb on - strand, within AO356_13790 at 3129.667 kb on - strand, within AO356_13790 at 3129.667 kb on - strand, within AO356_13790 at 3129.667 kb on - strand, within AO356_13790 at 3129.762 kb on + strand, within AO356_13790 at 3129.763 kb on - strand, within AO356_13790 at 3129.763 kb on - strand, within AO356_13790 at 3129.774 kb on + strand, within AO356_13790 at 3129.775 kb on - strand, within AO356_13790 at 3129.775 kb on - strand, within AO356_13790 at 3129.837 kb on + strand at 3129.939 kb on + strand at 3129.939 kb on + strand at 3129.939 kb on + strand at 3129.939 kb on + strand at 3129.940 kb on - strand at 3129.940 kb on - strand at 3129.940 kb on - strand at 3130.108 kb on - strand at 3130.123 kb on - strand at 3130.386 kb on + strand, within AO356_13795 at 3130.386 kb on + strand, within AO356_13795 at 3130.386 kb on + strand, within AO356_13795 at 3130.386 kb on + strand, within AO356_13795 at 3130.386 kb on + strand, within AO356_13795 at 3130.386 kb on + strand, within AO356_13795 at 3130.386 kb on + strand, within AO356_13795 at 3130.386 kb on + strand, within AO356_13795 at 3130.386 kb on + strand, within AO356_13795 at 3130.387 kb on - strand, within AO356_13795 at 3130.387 kb on - strand, within AO356_13795 at 3130.387 kb on - strand, within AO356_13795 at 3130.387 kb on - strand, within AO356_13795 at 3130.387 kb on - strand, within AO356_13795 at 3130.560 kb on + strand, within AO356_13795 at 3130.697 kb on + strand, within AO356_13795 at 3130.740 kb on + strand, within AO356_13795 at 3130.740 kb on + strand, within AO356_13795 at 3130.741 kb on - strand, within AO356_13795 at 3130.741 kb on - strand, within AO356_13795 at 3130.967 kb on + strand, within AO356_13795 at 3130.967 kb on + strand, within AO356_13795 at 3130.968 kb on - strand, within AO356_13795 at 3130.968 kb on - strand, within AO356_13795 at 3130.968 kb on - strand, within AO356_13795 at 3130.968 kb on - strand, within AO356_13795 at 3130.968 kb on - strand, within AO356_13795 at 3130.968 kb on - strand, within AO356_13795 at 3130.968 kb on - strand, within AO356_13795 at 3131.004 kb on + strand, within AO356_13795 at 3131.004 kb on + strand, within AO356_13795 at 3131.005 kb on - strand, within AO356_13795 at 3131.119 kb on - strand, within AO356_13795 at 3131.145 kb on - strand, within AO356_13795 at 3131.169 kb on + strand, within AO356_13795 at 3131.170 kb on - strand, within AO356_13795 at 3131.170 kb on - strand, within AO356_13795 at 3131.232 kb on + strand, within AO356_13795 at 3131.232 kb on + strand, within AO356_13795 at 3131.232 kb on + strand, within AO356_13795 at 3131.233 kb on - strand, within AO356_13795 at 3131.233 kb on - strand, within AO356_13795 at 3131.233 kb on - strand, within AO356_13795 at 3131.235 kb on + strand, within AO356_13795 at 3131.235 kb on + strand, within AO356_13795 at 3131.235 kb on + strand, within AO356_13795 at 3131.235 kb on + strand, within AO356_13795 at 3131.235 kb on + strand, within AO356_13795 at 3131.236 kb on - strand, within AO356_13795 at 3131.236 kb on - strand, within AO356_13795 at 3131.236 kb on - strand, within AO356_13795 at 3131.287 kb on - strand, within AO356_13795 at 3131.477 kb on + strand at 3131.477 kb on + strand at 3131.478 kb on - strand at 3131.478 kb on - strand at 3131.478 kb on - strand at 3131.535 kb on + strand at 3131.551 kb on - strand at 3131.578 kb on + strand at 3131.578 kb on + strand at 3131.578 kb on + strand at 3131.578 kb on + strand at 3131.579 kb on - strand at 3131.630 kb on - strand at 3131.631 kb on + strand at 3131.631 kb on + strand at 3131.631 kb on + strand at 3131.631 kb on + strand at 3131.719 kb on + strand at 3131.719 kb on + strand at 3131.719 kb on + strand at 3131.719 kb on + strand at 3131.719 kb on + strand at 3131.719 kb on + strand at 3131.719 kb on + strand at 3131.720 kb on - strand, within AO356_13800 at 3131.720 kb on - strand, within AO356_13800 at 3131.720 kb on - strand, within AO356_13800 at 3131.720 kb on - strand, within AO356_13800 at 3131.720 kb on - strand, within AO356_13800 at 3131.720 kb on - strand, within AO356_13800 at 3131.720 kb on - strand, within AO356_13800 at 3131.720 kb on - strand, within AO356_13800 at 3131.720 kb on - strand, within AO356_13800 at 3131.725 kb on + strand, within AO356_13800 at 3131.878 kb on + strand, within AO356_13800 at 3131.879 kb on - strand, within AO356_13800 at 3132.091 kb on + strand, within AO356_13800 at 3132.091 kb on + strand, within AO356_13800 at 3132.092 kb on - strand, within AO356_13800 at 3132.134 kb on - strand, within AO356_13800 at 3132.134 kb on - strand, within AO356_13800 at 3132.280 kb on + strand at 3132.280 kb on + strand at 3132.280 kb on + strand at 3132.280 kb on + strand at 3132.280 kb on + strand at 3132.280 kb on + strand at 3132.280 kb on + strand at 3132.280 kb on + strand at 3132.280 kb on + strand at 3132.280 kb on + strand at 3132.280 kb on + strand at 3132.281 kb on - strand at 3132.281 kb on - strand at 3132.281 kb on - strand at 3132.281 kb on - strand at 3132.281 kb on - strand at 3132.281 kb on - strand at 3132.281 kb on - strand at 3132.281 kb on - strand at 3132.281 kb on - strand at 3132.281 kb on - strand at 3132.293 kb on + strand at 3132.293 kb on + strand at 3132.293 kb on + strand at 3132.294 kb on - strand at 3132.294 kb on - strand at 3132.294 kb on - strand at 3132.341 kb on - strand at 3132.341 kb on - strand at 3132.383 kb on + strand at 3132.383 kb on + strand at 3132.384 kb on - strand at 3132.420 kb on + strand at 3132.420 kb on + strand at 3132.420 kb on + strand at 3132.420 kb on + strand at 3132.420 kb on + strand at 3132.420 kb on + strand at 3132.421 kb on - strand at 3132.421 kb on - strand at 3132.421 kb on - strand at 3132.421 kb on - strand at 3132.421 kb on - strand at 3132.421 kb on - strand at 3132.485 kb on + strand at 3132.485 kb on + strand at 3132.485 kb on + strand at 3132.485 kb on + strand at 3132.486 kb on - strand at 3132.486 kb on - strand at 3132.486 kb on - strand at 3132.486 kb on - strand at 3132.487 kb on + strand at 3132.487 kb on + strand at 3132.488 kb on - strand at 3132.488 kb on - strand at 3132.488 kb on - strand at 3132.488 kb on - strand at 3132.488 kb on - strand at 3132.488 kb on - strand at 3132.488 kb on - strand at 3132.488 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 360 hrs remove 3,129,540 + AO356_13790 0.75 +1.0 3,129,540 + AO356_13790 0.75 -0.7 3,129,582 + AO356_13790 0.78 +0.5 3,129,583 - AO356_13790 0.78 +0.8 3,129,583 - AO356_13790 0.78 +0.6 3,129,600 + AO356_13790 0.79 -0.2 3,129,600 + AO356_13790 0.79 +1.7 3,129,601 - AO356_13790 0.79 +1.4 3,129,601 - AO356_13790 0.79 +1.3 3,129,642 + AO356_13790 0.81 +0.1 3,129,643 - AO356_13790 0.81 +0.4 3,129,643 - AO356_13790 0.81 -0.1 3,129,666 + AO356_13790 0.83 +0.6 3,129,666 + AO356_13790 0.83 +0.4 3,129,666 + AO356_13790 0.83 +1.6 3,129,666 + AO356_13790 0.83 -0.4 3,129,666 + AO356_13790 0.83 +0.2 3,129,667 - AO356_13790 0.83 +0.7 3,129,667 - AO356_13790 0.83 -0.8 3,129,667 - AO356_13790 0.83 -0.3 3,129,667 - AO356_13790 0.83 +0.8 3,129,667 - AO356_13790 0.83 +0.8 3,129,762 + AO356_13790 0.88 -0.8 3,129,763 - AO356_13790 0.88 -0.4 3,129,763 - AO356_13790 0.88 +0.6 3,129,774 + AO356_13790 0.89 +0.5 3,129,775 - AO356_13790 0.89 +0.5 3,129,775 - AO356_13790 0.89 +0.4 3,129,837 + -1.1 3,129,939 + +0.3 3,129,939 + +0.8 3,129,939 + +0.5 3,129,939 + -0.1 3,129,940 - -1.9 3,129,940 - -1.0 3,129,940 - -0.3 3,130,108 - -0.3 3,130,123 - +0.9 3,130,386 + AO356_13795 0.19 +0.5 3,130,386 + AO356_13795 0.19 +0.5 3,130,386 + AO356_13795 0.19 -0.8 3,130,386 + AO356_13795 0.19 +0.8 3,130,386 + AO356_13795 0.19 +0.2 3,130,386 + AO356_13795 0.19 -0.0 3,130,386 + AO356_13795 0.19 +1.0 3,130,386 + AO356_13795 0.19 -2.4 3,130,386 + AO356_13795 0.19 +0.8 3,130,387 - AO356_13795 0.19 +0.0 3,130,387 - AO356_13795 0.19 +1.2 3,130,387 - AO356_13795 0.19 +0.9 3,130,387 - AO356_13795 0.19 +0.0 3,130,387 - AO356_13795 0.19 -0.8 3,130,560 + AO356_13795 0.31 +1.3 3,130,697 + AO356_13795 0.40 +1.7 3,130,740 + AO356_13795 0.43 +0.1 3,130,740 + AO356_13795 0.43 +0.9 3,130,741 - AO356_13795 0.43 +1.1 3,130,741 - AO356_13795 0.43 -0.5 3,130,967 + AO356_13795 0.58 +0.1 3,130,967 + AO356_13795 0.58 -0.6 3,130,968 - AO356_13795 0.59 -0.5 3,130,968 - AO356_13795 0.59 +0.1 3,130,968 - AO356_13795 0.59 +0.3 3,130,968 - AO356_13795 0.59 +0.5 3,130,968 - AO356_13795 0.59 +0.2 3,130,968 - AO356_13795 0.59 +0.4 3,130,968 - AO356_13795 0.59 -1.0 3,131,004 + AO356_13795 0.61 -1.2 3,131,004 + AO356_13795 0.61 +0.2 3,131,005 - AO356_13795 0.61 -0.7 3,131,119 - AO356_13795 0.69 +0.0 3,131,145 - AO356_13795 0.71 -0.2 3,131,169 + AO356_13795 0.72 -1.0 3,131,170 - AO356_13795 0.72 -0.4 3,131,170 - AO356_13795 0.72 +2.2 3,131,232 + AO356_13795 0.76 -0.0 3,131,232 + AO356_13795 0.76 -1.0 3,131,232 + AO356_13795 0.76 +1.2 3,131,233 - AO356_13795 0.77 +0.4 3,131,233 - AO356_13795 0.77 -0.6 3,131,233 - AO356_13795 0.77 -2.1 3,131,235 + AO356_13795 0.77 +2.0 3,131,235 + AO356_13795 0.77 -0.9 3,131,235 + AO356_13795 0.77 -0.1 3,131,235 + AO356_13795 0.77 -0.1 3,131,235 + AO356_13795 0.77 +0.2 3,131,236 - AO356_13795 0.77 -0.2 3,131,236 - AO356_13795 0.77 +0.4 3,131,236 - AO356_13795 0.77 -0.6 3,131,287 - AO356_13795 0.80 +0.1 3,131,477 + -0.2 3,131,477 + -0.3 3,131,478 - +0.8 3,131,478 - -1.4 3,131,478 - -1.1 3,131,535 + -0.6 3,131,551 - +0.5 3,131,578 + +0.4 3,131,578 + +0.0 3,131,578 + -1.9 3,131,578 + +0.5 3,131,579 - +0.3 3,131,630 - +0.4 3,131,631 + -0.8 3,131,631 + -0.2 3,131,631 + +0.3 3,131,631 + +0.4 3,131,719 + +0.5 3,131,719 + -1.0 3,131,719 + +0.4 3,131,719 + -0.5 3,131,719 + -0.5 3,131,719 + -1.0 3,131,719 + +0.3 3,131,720 - AO356_13800 0.10 -0.7 3,131,720 - AO356_13800 0.10 -0.0 3,131,720 - AO356_13800 0.10 -1.2 3,131,720 - AO356_13800 0.10 -0.6 3,131,720 - AO356_13800 0.10 +0.3 3,131,720 - AO356_13800 0.10 +0.1 3,131,720 - AO356_13800 0.10 +0.5 3,131,720 - AO356_13800 0.10 -0.1 3,131,720 - AO356_13800 0.10 +1.6 3,131,725 + AO356_13800 0.11 -1.0 3,131,878 + AO356_13800 0.35 -2.2 3,131,879 - AO356_13800 0.36 +0.3 3,132,091 + AO356_13800 0.70 -1.7 3,132,091 + AO356_13800 0.70 -0.7 3,132,092 - AO356_13800 0.70 +0.7 3,132,134 - AO356_13800 0.77 -0.9 3,132,134 - AO356_13800 0.77 +0.4 3,132,280 + -0.5 3,132,280 + -0.2 3,132,280 + +0.3 3,132,280 + +1.9 3,132,280 + +0.2 3,132,280 + +0.2 3,132,280 + +0.3 3,132,280 + -1.2 3,132,280 + +0.4 3,132,280 + +0.8 3,132,280 + -0.7 3,132,281 - +0.1 3,132,281 - -0.6 3,132,281 - -0.3 3,132,281 - +0.5 3,132,281 - -0.8 3,132,281 - +0.2 3,132,281 - +0.8 3,132,281 - +0.0 3,132,281 - +1.7 3,132,281 - +0.3 3,132,293 + -0.3 3,132,293 + +0.9 3,132,293 + -1.3 3,132,294 - +0.6 3,132,294 - -0.5 3,132,294 - +0.7 3,132,341 - +0.3 3,132,341 - +1.0 3,132,383 + -0.0 3,132,383 + +1.2 3,132,384 - -0.3 3,132,420 + -1.4 3,132,420 + +0.4 3,132,420 + +0.6 3,132,420 + +1.0 3,132,420 + +1.3 3,132,420 + -0.0 3,132,421 - +0.2 3,132,421 - -0.1 3,132,421 - +0.5 3,132,421 - +0.8 3,132,421 - +0.4 3,132,421 - +1.6 3,132,485 + -0.4 3,132,485 + -1.0 3,132,485 + +0.4 3,132,485 + +0.2 3,132,486 - +0.7 3,132,486 - +0.1 3,132,486 - -0.3 3,132,486 - -0.3 3,132,487 + -0.0 3,132,487 + -0.8 3,132,488 - +0.2 3,132,488 - +0.3 3,132,488 - -1.0 3,132,488 - -0.4 3,132,488 - +0.4 3,132,488 - -0.5 3,132,488 - -0.0 3,132,488 - +0.2
Or see this region's nucleotide sequence