Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11545

Experiment: 4C survival; 360 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_11540 and AO356_11545 are separated by 150 nucleotidesAO356_11545 and AO356_11550 are separated by 186 nucleotides AO356_11540: AO356_11540 - glutathione S-transferase, at 2,615,381 to 2,616,076 _11540 AO356_11545: AO356_11545 - transcriptional regulator, at 2,616,227 to 2,616,790 _11545 AO356_11550: AO356_11550 - diguanylate cyclase, at 2,616,977 to 2,618,101 _11550 Position (kb) 2616 2617Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2615.318 kb on + strandat 2615.318 kb on + strandat 2615.318 kb on + strandat 2615.318 kb on + strandat 2615.319 kb on - strandat 2615.332 kb on + strandat 2615.332 kb on + strandat 2615.333 kb on - strandat 2615.366 kb on + strandat 2615.367 kb on - strandat 2615.382 kb on + strandat 2615.383 kb on - strandat 2615.592 kb on + strand, within AO356_11540at 2615.592 kb on + strand, within AO356_11540at 2615.593 kb on - strand, within AO356_11540at 2615.649 kb on + strand, within AO356_11540at 2615.649 kb on + strand, within AO356_11540at 2615.649 kb on + strand, within AO356_11540at 2615.649 kb on + strand, within AO356_11540at 2615.650 kb on - strand, within AO356_11540at 2615.650 kb on - strand, within AO356_11540at 2615.694 kb on + strand, within AO356_11540at 2615.695 kb on - strand, within AO356_11540at 2615.743 kb on + strand, within AO356_11540at 2615.743 kb on + strand, within AO356_11540at 2615.743 kb on + strand, within AO356_11540at 2615.743 kb on + strand, within AO356_11540at 2615.743 kb on + strand, within AO356_11540at 2615.744 kb on - strand, within AO356_11540at 2615.744 kb on - strand, within AO356_11540at 2615.744 kb on - strand, within AO356_11540at 2615.744 kb on - strand, within AO356_11540at 2615.744 kb on - strand, within AO356_11540at 2615.744 kb on - strand, within AO356_11540at 2615.744 kb on - strand, within AO356_11540at 2615.744 kb on - strand, within AO356_11540at 2615.811 kb on + strand, within AO356_11540at 2615.812 kb on - strand, within AO356_11540at 2615.812 kb on - strand, within AO356_11540at 2615.812 kb on - strand, within AO356_11540at 2615.812 kb on - strand, within AO356_11540at 2615.883 kb on + strand, within AO356_11540at 2615.883 kb on + strand, within AO356_11540at 2615.883 kb on + strand, within AO356_11540at 2615.883 kb on + strand, within AO356_11540at 2616.021 kb on + strandat 2616.021 kb on + strandat 2616.021 kb on + strandat 2616.022 kb on - strandat 2616.034 kb on + strandat 2616.034 kb on + strandat 2616.034 kb on + strandat 2616.034 kb on + strandat 2616.034 kb on + strandat 2616.034 kb on + strandat 2616.035 kb on - strandat 2616.035 kb on - strandat 2616.035 kb on - strandat 2616.127 kb on + strandat 2616.127 kb on + strandat 2616.178 kb on + strandat 2616.178 kb on + strandat 2616.179 kb on - strandat 2616.191 kb on - strandat 2616.298 kb on + strand, within AO356_11545at 2616.350 kb on + strand, within AO356_11545at 2616.350 kb on + strand, within AO356_11545at 2616.350 kb on + strand, within AO356_11545at 2616.350 kb on + strand, within AO356_11545at 2616.350 kb on + strand, within AO356_11545at 2616.350 kb on + strand, within AO356_11545at 2616.350 kb on + strand, within AO356_11545at 2616.351 kb on - strand, within AO356_11545at 2616.351 kb on - strand, within AO356_11545at 2616.351 kb on - strand, within AO356_11545at 2616.351 kb on - strand, within AO356_11545at 2616.351 kb on - strand, within AO356_11545at 2616.351 kb on - strand, within AO356_11545at 2616.353 kb on + strand, within AO356_11545at 2616.353 kb on + strand, within AO356_11545at 2616.354 kb on - strand, within AO356_11545at 2616.354 kb on - strand, within AO356_11545at 2616.401 kb on + strand, within AO356_11545at 2616.468 kb on + strand, within AO356_11545at 2616.468 kb on + strand, within AO356_11545at 2616.468 kb on + strand, within AO356_11545at 2616.468 kb on + strand, within AO356_11545at 2616.468 kb on + strand, within AO356_11545at 2616.468 kb on + strand, within AO356_11545at 2616.468 kb on + strand, within AO356_11545at 2616.469 kb on - strand, within AO356_11545at 2616.469 kb on - strand, within AO356_11545at 2616.469 kb on - strand, within AO356_11545at 2616.469 kb on - strand, within AO356_11545at 2616.469 kb on - strand, within AO356_11545at 2616.476 kb on + strand, within AO356_11545at 2616.548 kb on + strand, within AO356_11545at 2616.549 kb on - strand, within AO356_11545at 2616.549 kb on - strand, within AO356_11545at 2616.625 kb on - strand, within AO356_11545at 2616.625 kb on - strand, within AO356_11545at 2616.625 kb on - strand, within AO356_11545at 2616.646 kb on + strand, within AO356_11545at 2616.647 kb on - strand, within AO356_11545at 2616.647 kb on - strand, within AO356_11545at 2616.683 kb on + strand, within AO356_11545at 2616.683 kb on + strand, within AO356_11545at 2616.684 kb on - strand, within AO356_11545at 2616.684 kb on - strand, within AO356_11545at 2616.684 kb on - strand, within AO356_11545at 2616.684 kb on - strand, within AO356_11545at 2616.684 kb on - strand, within AO356_11545at 2616.684 kb on - strand, within AO356_11545at 2616.684 kb on - strand, within AO356_11545at 2616.684 kb on - strand, within AO356_11545at 2616.684 kb on - strand, within AO356_11545at 2616.709 kb on - strand, within AO356_11545at 2616.709 kb on - strand, within AO356_11545at 2616.761 kb on + strandat 2616.796 kb on + strandat 2616.796 kb on + strandat 2616.796 kb on + strandat 2616.822 kb on + strandat 2616.823 kb on - strandat 2616.823 kb on - strandat 2616.823 kb on - strandat 2616.823 kb on - strandat 2616.904 kb on + strandat 2616.904 kb on + strandat 2616.904 kb on + strandat 2616.904 kb on + strandat 2616.904 kb on + strandat 2616.904 kb on + strandat 2616.905 kb on - strandat 2616.905 kb on - strandat 2616.905 kb on - strandat 2616.905 kb on - strandat 2616.905 kb on - strandat 2616.950 kb on + strandat 2616.950 kb on + strandat 2616.950 kb on + strandat 2617.018 kb on - strandat 2617.088 kb on + strandat 2617.088 kb on + strandat 2617.088 kb on + strandat 2617.088 kb on + strandat 2617.088 kb on + strandat 2617.088 kb on + strandat 2617.088 kb on + strandat 2617.089 kb on - strandat 2617.089 kb on - strandat 2617.089 kb on - strandat 2617.089 kb on - strandat 2617.089 kb on - strandat 2617.144 kb on + strand, within AO356_11550at 2617.144 kb on + strand, within AO356_11550at 2617.145 kb on - strand, within AO356_11550at 2617.145 kb on - strand, within AO356_11550at 2617.189 kb on + strand, within AO356_11550at 2617.189 kb on + strand, within AO356_11550at 2617.209 kb on - strand, within AO356_11550at 2617.209 kb on - strand, within AO356_11550at 2617.234 kb on + strand, within AO356_11550at 2617.234 kb on + strand, within AO356_11550at 2617.234 kb on + strand, within AO356_11550at 2617.234 kb on + strand, within AO356_11550at 2617.234 kb on + strand, within AO356_11550at 2617.234 kb on + strand, within AO356_11550at 2617.235 kb on - strand, within AO356_11550at 2617.235 kb on - strand, within AO356_11550at 2617.279 kb on - strand, within AO356_11550at 2617.361 kb on - strand, within AO356_11550at 2617.395 kb on - strand, within AO356_11550at 2617.403 kb on + strand, within AO356_11550at 2617.404 kb on - strand, within AO356_11550at 2617.411 kb on + strand, within AO356_11550at 2617.579 kb on + strand, within AO356_11550at 2617.579 kb on + strand, within AO356_11550at 2617.688 kb on + strand, within AO356_11550at 2617.688 kb on + strand, within AO356_11550at 2617.688 kb on + strand, within AO356_11550at 2617.688 kb on + strand, within AO356_11550at 2617.688 kb on + strand, within AO356_11550at 2617.689 kb on - strand, within AO356_11550at 2617.689 kb on - strand, within AO356_11550at 2617.689 kb on - strand, within AO356_11550at 2617.689 kb on - strand, within AO356_11550at 2617.689 kb on - strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.769 kb on + strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550at 2617.770 kb on - strand, within AO356_11550

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 360 hrs
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2,615,318 + -0.3
2,615,318 + -0.1
2,615,318 + +0.6
2,615,318 + -0.0
2,615,319 - -1.4
2,615,332 + +0.3
2,615,332 + -0.3
2,615,333 - +0.4
2,615,366 + -1.5
2,615,367 - -0.5
2,615,382 + +0.8
2,615,383 - -0.1
2,615,592 + AO356_11540 0.30 -0.7
2,615,592 + AO356_11540 0.30 -0.7
2,615,593 - AO356_11540 0.30 -1.5
2,615,649 + AO356_11540 0.39 +1.0
2,615,649 + AO356_11540 0.39 +0.2
2,615,649 + AO356_11540 0.39 -0.0
2,615,649 + AO356_11540 0.39 +1.0
2,615,650 - AO356_11540 0.39 -0.1
2,615,650 - AO356_11540 0.39 +0.3
2,615,694 + AO356_11540 0.45 -1.4
2,615,695 - AO356_11540 0.45 -0.5
2,615,743 + AO356_11540 0.52 +1.7
2,615,743 + AO356_11540 0.52 +0.2
2,615,743 + AO356_11540 0.52 +0.7
2,615,743 + AO356_11540 0.52 -0.4
2,615,743 + AO356_11540 0.52 +0.5
2,615,744 - AO356_11540 0.52 -0.3
2,615,744 - AO356_11540 0.52 +0.1
2,615,744 - AO356_11540 0.52 +0.6
2,615,744 - AO356_11540 0.52 -0.2
2,615,744 - AO356_11540 0.52 -0.8
2,615,744 - AO356_11540 0.52 +1.0
2,615,744 - AO356_11540 0.52 +0.1
2,615,744 - AO356_11540 0.52 +0.0
2,615,811 + AO356_11540 0.62 -0.6
2,615,812 - AO356_11540 0.62 -0.4
2,615,812 - AO356_11540 0.62 +1.7
2,615,812 - AO356_11540 0.62 -0.4
2,615,812 - AO356_11540 0.62 -0.8
2,615,883 + AO356_11540 0.72 -2.0
2,615,883 + AO356_11540 0.72 +0.1
2,615,883 + AO356_11540 0.72 +0.3
2,615,883 + AO356_11540 0.72 -0.3
2,616,021 + -1.8
2,616,021 + +0.4
2,616,021 + -0.6
2,616,022 - +0.0
2,616,034 + +0.4
2,616,034 + +0.4
2,616,034 + +0.8
2,616,034 + -0.9
2,616,034 + -0.1
2,616,034 + -1.3
2,616,035 - -0.8
2,616,035 - +0.6
2,616,035 - -0.0
2,616,127 + +1.0
2,616,127 + -0.4
2,616,178 + +0.9
2,616,178 + -0.5
2,616,179 - +0.2
2,616,191 - -0.4
2,616,298 + AO356_11545 0.13 -0.0
2,616,350 + AO356_11545 0.22 -1.8
2,616,350 + AO356_11545 0.22 -0.6
2,616,350 + AO356_11545 0.22 +0.7
2,616,350 + AO356_11545 0.22 +1.0
2,616,350 + AO356_11545 0.22 +0.6
2,616,350 + AO356_11545 0.22 -1.2
2,616,350 + AO356_11545 0.22 -0.1
2,616,351 - AO356_11545 0.22 +1.2
2,616,351 - AO356_11545 0.22 -0.2
2,616,351 - AO356_11545 0.22 +1.0
2,616,351 - AO356_11545 0.22 -0.1
2,616,351 - AO356_11545 0.22 -0.7
2,616,351 - AO356_11545 0.22 +0.9
2,616,353 + AO356_11545 0.22 -2.3
2,616,353 + AO356_11545 0.22 -1.4
2,616,354 - AO356_11545 0.23 -0.5
2,616,354 - AO356_11545 0.23 -0.4
2,616,401 + AO356_11545 0.31 +0.3
2,616,468 + AO356_11545 0.43 -0.6
2,616,468 + AO356_11545 0.43 -0.4
2,616,468 + AO356_11545 0.43 -0.4
2,616,468 + AO356_11545 0.43 -0.7
2,616,468 + AO356_11545 0.43 -0.9
2,616,468 + AO356_11545 0.43 -0.2
2,616,468 + AO356_11545 0.43 +0.9
2,616,469 - AO356_11545 0.43 +0.4
2,616,469 - AO356_11545 0.43 +0.2
2,616,469 - AO356_11545 0.43 +0.1
2,616,469 - AO356_11545 0.43 -0.5
2,616,469 - AO356_11545 0.43 +1.0
2,616,476 + AO356_11545 0.44 +0.6
2,616,548 + AO356_11545 0.57 -0.3
2,616,549 - AO356_11545 0.57 +0.2
2,616,549 - AO356_11545 0.57 -0.4
2,616,625 - AO356_11545 0.71 +0.3
2,616,625 - AO356_11545 0.71 -1.0
2,616,625 - AO356_11545 0.71 +0.3
2,616,646 + AO356_11545 0.74 -0.7
2,616,647 - AO356_11545 0.74 +1.2
2,616,647 - AO356_11545 0.74 +0.3
2,616,683 + AO356_11545 0.81 -1.8
2,616,683 + AO356_11545 0.81 -0.2
2,616,684 - AO356_11545 0.81 +0.4
2,616,684 - AO356_11545 0.81 -0.0
2,616,684 - AO356_11545 0.81 +0.1
2,616,684 - AO356_11545 0.81 -1.7
2,616,684 - AO356_11545 0.81 -0.1
2,616,684 - AO356_11545 0.81 +0.2
2,616,684 - AO356_11545 0.81 -0.0
2,616,684 - AO356_11545 0.81 +0.1
2,616,684 - AO356_11545 0.81 +0.3
2,616,709 - AO356_11545 0.85 -1.9
2,616,709 - AO356_11545 0.85 +0.3
2,616,761 + -0.4
2,616,796 + -0.9
2,616,796 + -0.8
2,616,796 + -1.2
2,616,822 + -0.0
2,616,823 - +0.5
2,616,823 - -0.6
2,616,823 - +0.1
2,616,823 - +0.8
2,616,904 + -0.1
2,616,904 + -0.7
2,616,904 + -0.3
2,616,904 + -0.4
2,616,904 + -0.7
2,616,904 + -0.7
2,616,905 - +0.3
2,616,905 - +1.3
2,616,905 - +1.0
2,616,905 - +0.3
2,616,905 - +0.7
2,616,950 + -2.3
2,616,950 + +0.4
2,616,950 + -0.7
2,617,018 - +0.3
2,617,088 + -0.6
2,617,088 + +0.3
2,617,088 + +0.2
2,617,088 + +0.5
2,617,088 + -1.2
2,617,088 + +1.1
2,617,088 + -0.8
2,617,089 - -0.8
2,617,089 - -1.1
2,617,089 - +0.6
2,617,089 - +0.9
2,617,089 - +0.5
2,617,144 + AO356_11550 0.15 +0.8
2,617,144 + AO356_11550 0.15 +1.7
2,617,145 - AO356_11550 0.15 +0.3
2,617,145 - AO356_11550 0.15 +0.9
2,617,189 + AO356_11550 0.19 -0.0
2,617,189 + AO356_11550 0.19 -0.2
2,617,209 - AO356_11550 0.21 -0.3
2,617,209 - AO356_11550 0.21 +0.5
2,617,234 + AO356_11550 0.23 +0.4
2,617,234 + AO356_11550 0.23 +0.7
2,617,234 + AO356_11550 0.23 +1.1
2,617,234 + AO356_11550 0.23 +0.8
2,617,234 + AO356_11550 0.23 +1.0
2,617,234 + AO356_11550 0.23 -0.7
2,617,235 - AO356_11550 0.23 +1.5
2,617,235 - AO356_11550 0.23 -0.6
2,617,279 - AO356_11550 0.27 -1.2
2,617,361 - AO356_11550 0.34 +0.6
2,617,395 - AO356_11550 0.37 +0.6
2,617,403 + AO356_11550 0.38 -0.1
2,617,404 - AO356_11550 0.38 -0.6
2,617,411 + AO356_11550 0.39 +0.5
2,617,579 + AO356_11550 0.54 -0.4
2,617,579 + AO356_11550 0.54 -0.2
2,617,688 + AO356_11550 0.63 +1.1
2,617,688 + AO356_11550 0.63 -0.1
2,617,688 + AO356_11550 0.63 -0.1
2,617,688 + AO356_11550 0.63 -0.2
2,617,688 + AO356_11550 0.63 +1.4
2,617,689 - AO356_11550 0.63 -0.5
2,617,689 - AO356_11550 0.63 +0.1
2,617,689 - AO356_11550 0.63 -0.2
2,617,689 - AO356_11550 0.63 +0.5
2,617,689 - AO356_11550 0.63 +0.2
2,617,769 + AO356_11550 0.70 -2.1
2,617,769 + AO356_11550 0.70 +0.5
2,617,769 + AO356_11550 0.70 -0.8
2,617,769 + AO356_11550 0.70 -0.0
2,617,769 + AO356_11550 0.70 +0.8
2,617,769 + AO356_11550 0.70 +0.7
2,617,769 + AO356_11550 0.70 +0.6
2,617,769 + AO356_11550 0.70 +0.6
2,617,769 + AO356_11550 0.70 +0.5
2,617,769 + AO356_11550 0.70 +0.4
2,617,769 + AO356_11550 0.70 -0.2
2,617,769 + AO356_11550 0.70 +0.1
2,617,769 + AO356_11550 0.70 -0.5
2,617,769 + AO356_11550 0.70 -0.3
2,617,769 + AO356_11550 0.70 -0.3
2,617,769 + AO356_11550 0.70 -0.3
2,617,769 + AO356_11550 0.70 +1.5
2,617,769 + AO356_11550 0.70 -0.3
2,617,769 + AO356_11550 0.70 -1.3
2,617,769 + AO356_11550 0.70 -0.8
2,617,769 + AO356_11550 0.70 +0.2
2,617,769 + AO356_11550 0.70 +0.2
2,617,769 + AO356_11550 0.70 +1.3
2,617,770 - AO356_11550 0.70 +1.6
2,617,770 - AO356_11550 0.70 +0.4
2,617,770 - AO356_11550 0.70 +3.5
2,617,770 - AO356_11550 0.70 -0.2
2,617,770 - AO356_11550 0.70 -0.0
2,617,770 - AO356_11550 0.70 +0.7
2,617,770 - AO356_11550 0.70 +0.4
2,617,770 - AO356_11550 0.70 +2.2
2,617,770 - AO356_11550 0.70 -2.0
2,617,770 - AO356_11550 0.70 +0.3
2,617,770 - AO356_11550 0.70 +0.9
2,617,770 - AO356_11550 0.70 +0.7
2,617,770 - AO356_11550 0.70 +1.0
2,617,770 - AO356_11550 0.70 +0.0
2,617,770 - AO356_11550 0.70 +0.1

Or see this region's nucleotide sequence