Experiment: 4C survival; 360 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07365 and AO356_07370 are separated by 223 nucleotides AO356_07370 and AO356_07375 are separated by 38 nucleotides AO356_07375 and AO356_07380 are separated by 305 nucleotides
AO356_07365: AO356_07365 - thymidine phosphorylase, at 1,632,198 to 1,634,411
_07365
AO356_07370: AO356_07370 - nicotinate-nucleotide pyrophosphorylase, at 1,634,635 to 1,635,483
_07370
AO356_07375: AO356_07375 - dephospho-CoA kinase, at 1,635,522 to 1,635,827
_07375
AO356_07380: AO356_07380 - hypothetical protein, at 1,636,133 to 1,636,681
_07380
Position (kb)
1634
1635
1636 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1633.774 kb on + strand, within AO356_07365 at 1633.774 kb on + strand, within AO356_07365 at 1633.774 kb on + strand, within AO356_07365 at 1633.775 kb on - strand, within AO356_07365 at 1633.775 kb on - strand, within AO356_07365 at 1633.775 kb on - strand, within AO356_07365 at 1633.775 kb on - strand, within AO356_07365 at 1633.801 kb on + strand, within AO356_07365 at 1633.801 kb on + strand, within AO356_07365 at 1633.801 kb on + strand, within AO356_07365 at 1633.801 kb on + strand, within AO356_07365 at 1633.802 kb on - strand, within AO356_07365 at 1633.909 kb on + strand, within AO356_07365 at 1633.909 kb on + strand, within AO356_07365 at 1633.909 kb on + strand, within AO356_07365 at 1633.909 kb on + strand, within AO356_07365 at 1633.910 kb on - strand, within AO356_07365 at 1633.910 kb on - strand, within AO356_07365 at 1633.910 kb on - strand, within AO356_07365 at 1633.910 kb on - strand, within AO356_07365 at 1633.910 kb on - strand, within AO356_07365 at 1633.910 kb on - strand, within AO356_07365 at 1634.197 kb on + strand at 1634.198 kb on - strand at 1634.198 kb on - strand at 1634.382 kb on + strand at 1634.382 kb on + strand at 1634.383 kb on - strand at 1634.383 kb on - strand at 1634.383 kb on - strand at 1634.391 kb on + strand at 1634.391 kb on + strand at 1634.391 kb on + strand at 1634.391 kb on + strand at 1634.391 kb on + strand at 1634.391 kb on + strand at 1634.391 kb on + strand at 1634.391 kb on + strand at 1634.392 kb on - strand at 1634.392 kb on - strand at 1634.453 kb on + strand at 1634.453 kb on + strand at 1634.454 kb on - strand at 1634.454 kb on - strand at 1634.454 kb on - strand at 1634.477 kb on + strand at 1634.484 kb on + strand at 1634.484 kb on + strand at 1634.485 kb on - strand at 1634.485 kb on - strand at 1634.485 kb on - strand at 1634.530 kb on + strand at 1634.531 kb on - strand at 1634.540 kb on + strand at 1634.540 kb on + strand at 1634.540 kb on + strand at 1634.540 kb on + strand at 1634.540 kb on + strand at 1634.540 kb on + strand at 1634.540 kb on + strand at 1634.541 kb on - strand at 1634.541 kb on - strand at 1634.541 kb on - strand at 1634.541 kb on - strand at 1634.541 kb on - strand at 1634.541 kb on - strand at 1634.541 kb on - strand at 1634.602 kb on + strand at 1634.602 kb on + strand at 1634.602 kb on + strand at 1634.602 kb on + strand at 1634.602 kb on + strand at 1634.602 kb on + strand at 1634.603 kb on - strand at 1634.603 kb on - strand at 1634.603 kb on - strand at 1634.603 kb on - strand at 1634.603 kb on - strand at 1634.603 kb on - strand at 1634.603 kb on - strand at 1634.604 kb on + strand at 1634.604 kb on + strand at 1634.605 kb on - strand at 1634.605 kb on - strand at 1634.605 kb on - strand at 1634.645 kb on + strand at 1634.645 kb on + strand at 1634.645 kb on + strand at 1634.645 kb on + strand at 1634.646 kb on - strand at 1634.646 kb on - strand at 1634.995 kb on + strand, within AO356_07370 at 1635.080 kb on - strand, within AO356_07370 at 1635.124 kb on + strand, within AO356_07370 at 1635.124 kb on + strand, within AO356_07370 at 1635.124 kb on + strand, within AO356_07370 at 1635.125 kb on - strand, within AO356_07370 at 1635.125 kb on - strand, within AO356_07370 at 1635.415 kb on + strand at 1635.415 kb on + strand at 1635.415 kb on + strand at 1635.415 kb on + strand at 1635.415 kb on + strand at 1635.415 kb on + strand at 1635.415 kb on + strand at 1635.415 kb on + strand at 1635.415 kb on + strand at 1635.415 kb on + strand at 1635.415 kb on + strand at 1635.415 kb on + strand at 1635.416 kb on - strand at 1635.416 kb on - strand at 1635.416 kb on - strand at 1635.416 kb on - strand at 1635.416 kb on - strand at 1635.416 kb on - strand at 1635.416 kb on - strand at 1635.416 kb on - strand at 1635.416 kb on - strand at 1635.416 kb on - strand at 1635.416 kb on - strand at 1635.416 kb on - strand at 1635.416 kb on - strand at 1635.416 kb on - strand at 1635.550 kb on + strand at 1635.550 kb on + strand at 1635.550 kb on + strand at 1635.551 kb on - strand at 1635.551 kb on - strand at 1635.638 kb on - strand, within AO356_07375 at 1635.638 kb on - strand, within AO356_07375 at 1635.638 kb on - strand, within AO356_07375 at 1635.638 kb on - strand, within AO356_07375 at 1635.638 kb on - strand, within AO356_07375 at 1635.772 kb on + strand, within AO356_07375 at 1635.772 kb on + strand, within AO356_07375 at 1635.773 kb on - strand, within AO356_07375 at 1635.773 kb on - strand, within AO356_07375 at 1635.773 kb on - strand, within AO356_07375 at 1635.773 kb on - strand, within AO356_07375 at 1635.914 kb on - strand at 1635.981 kb on + strand at 1635.981 kb on + strand at 1635.983 kb on + strand at 1635.983 kb on + strand at 1635.983 kb on + strand at 1635.983 kb on + strand at 1635.983 kb on + strand at 1635.983 kb on + strand at 1635.983 kb on + strand at 1635.983 kb on + strand at 1635.983 kb on + strand at 1635.983 kb on + strand at 1635.983 kb on + strand at 1635.983 kb on + strand at 1635.984 kb on - strand at 1635.984 kb on - strand at 1635.984 kb on - strand at 1635.984 kb on - strand at 1635.984 kb on - strand at 1635.984 kb on - strand at 1635.984 kb on - strand at 1635.984 kb on - strand at 1635.984 kb on - strand at 1636.016 kb on + strand at 1636.016 kb on + strand at 1636.016 kb on + strand at 1636.016 kb on + strand at 1636.017 kb on - strand at 1636.017 kb on - strand at 1636.017 kb on - strand at 1636.017 kb on - strand at 1636.017 kb on - strand at 1636.017 kb on - strand at 1636.017 kb on - strand at 1636.017 kb on - strand at 1636.022 kb on + strand at 1636.022 kb on + strand at 1636.022 kb on + strand at 1636.023 kb on - strand at 1636.023 kb on - strand at 1636.023 kb on - strand at 1636.023 kb on - strand at 1636.023 kb on - strand at 1636.192 kb on + strand, within AO356_07380 at 1636.280 kb on + strand, within AO356_07380 at 1636.280 kb on + strand, within AO356_07380 at 1636.281 kb on - strand, within AO356_07380 at 1636.281 kb on - strand, within AO356_07380 at 1636.294 kb on + strand, within AO356_07380 at 1636.294 kb on + strand, within AO356_07380 at 1636.294 kb on + strand, within AO356_07380 at 1636.295 kb on - strand, within AO356_07380 at 1636.298 kb on + strand, within AO356_07380 at 1636.299 kb on - strand, within AO356_07380 at 1636.299 kb on - strand, within AO356_07380 at 1636.299 kb on - strand, within AO356_07380 at 1636.299 kb on - strand, within AO356_07380 at 1636.299 kb on - strand, within AO356_07380 at 1636.299 kb on - strand, within AO356_07380 at 1636.299 kb on - strand, within AO356_07380 at 1636.363 kb on + strand, within AO356_07380 at 1636.363 kb on + strand, within AO356_07380 at 1636.364 kb on - strand, within AO356_07380 at 1636.364 kb on - strand, within AO356_07380
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 360 hrs remove 1,633,774 + AO356_07365 0.71 +0.9 1,633,774 + AO356_07365 0.71 +1.5 1,633,774 + AO356_07365 0.71 +0.9 1,633,775 - AO356_07365 0.71 -0.2 1,633,775 - AO356_07365 0.71 +1.0 1,633,775 - AO356_07365 0.71 -0.0 1,633,775 - AO356_07365 0.71 +0.5 1,633,801 + AO356_07365 0.72 -0.3 1,633,801 + AO356_07365 0.72 -1.1 1,633,801 + AO356_07365 0.72 -0.7 1,633,801 + AO356_07365 0.72 +0.1 1,633,802 - AO356_07365 0.72 -0.1 1,633,909 + AO356_07365 0.77 -0.4 1,633,909 + AO356_07365 0.77 -0.2 1,633,909 + AO356_07365 0.77 +0.7 1,633,909 + AO356_07365 0.77 +0.9 1,633,910 - AO356_07365 0.77 +0.3 1,633,910 - AO356_07365 0.77 -0.7 1,633,910 - AO356_07365 0.77 +0.8 1,633,910 - AO356_07365 0.77 +0.4 1,633,910 - AO356_07365 0.77 -0.4 1,633,910 - AO356_07365 0.77 -2.3 1,634,197 + -1.9 1,634,198 - +0.1 1,634,198 - +1.2 1,634,382 + -0.4 1,634,382 + -1.3 1,634,383 - -0.8 1,634,383 - +0.5 1,634,383 - +0.6 1,634,391 + +0.7 1,634,391 + +0.1 1,634,391 + +0.6 1,634,391 + +0.4 1,634,391 + +0.3 1,634,391 + -1.5 1,634,391 + +0.5 1,634,391 + -0.8 1,634,392 - -0.7 1,634,392 - -0.6 1,634,453 + -0.8 1,634,453 + -0.2 1,634,454 - +1.0 1,634,454 - +0.9 1,634,454 - +0.4 1,634,477 + +0.1 1,634,484 + +0.2 1,634,484 + -0.2 1,634,485 - +1.3 1,634,485 - +0.6 1,634,485 - +0.5 1,634,530 + +0.4 1,634,531 - +0.6 1,634,540 + -0.4 1,634,540 + +0.8 1,634,540 + +1.4 1,634,540 + -0.0 1,634,540 + -0.1 1,634,540 + -0.3 1,634,540 + +0.5 1,634,541 - -1.1 1,634,541 - +0.2 1,634,541 - +0.3 1,634,541 - +0.9 1,634,541 - -0.2 1,634,541 - +0.5 1,634,541 - -0.5 1,634,602 + +1.9 1,634,602 + +1.1 1,634,602 + -0.5 1,634,602 + +0.0 1,634,602 + +0.2 1,634,602 + -0.7 1,634,603 - +1.5 1,634,603 - +1.8 1,634,603 - -0.4 1,634,603 - +0.2 1,634,603 - +0.5 1,634,603 - +0.4 1,634,603 - -0.6 1,634,604 + +0.8 1,634,604 + +0.4 1,634,605 - +0.7 1,634,605 - -0.0 1,634,605 - -0.3 1,634,645 + +0.4 1,634,645 + +0.4 1,634,645 + +0.1 1,634,645 + +0.4 1,634,646 - +0.4 1,634,646 - +0.2 1,634,995 + AO356_07370 0.42 +0.5 1,635,080 - AO356_07370 0.52 -0.2 1,635,124 + AO356_07370 0.58 +1.0 1,635,124 + AO356_07370 0.58 +0.1 1,635,124 + AO356_07370 0.58 +0.9 1,635,125 - AO356_07370 0.58 -0.0 1,635,125 - AO356_07370 0.58 -0.6 1,635,415 + +1.0 1,635,415 + -0.3 1,635,415 + -1.4 1,635,415 + +0.1 1,635,415 + +0.2 1,635,415 + +0.3 1,635,415 + -0.6 1,635,415 + +1.3 1,635,415 + +0.5 1,635,415 + +0.7 1,635,415 + -1.5 1,635,415 + -0.7 1,635,416 - +1.0 1,635,416 - +0.4 1,635,416 - -0.4 1,635,416 - +0.2 1,635,416 - +0.2 1,635,416 - -0.1 1,635,416 - -0.4 1,635,416 - -0.7 1,635,416 - -0.0 1,635,416 - +1.1 1,635,416 - -0.9 1,635,416 - +0.1 1,635,416 - +0.6 1,635,416 - +1.0 1,635,550 + -0.5 1,635,550 + +0.2 1,635,550 + +1.2 1,635,551 - -0.4 1,635,551 - -0.9 1,635,638 - AO356_07375 0.38 -0.2 1,635,638 - AO356_07375 0.38 +1.1 1,635,638 - AO356_07375 0.38 +0.1 1,635,638 - AO356_07375 0.38 -1.2 1,635,638 - AO356_07375 0.38 -0.7 1,635,772 + AO356_07375 0.82 -0.1 1,635,772 + AO356_07375 0.82 -0.8 1,635,773 - AO356_07375 0.82 +0.5 1,635,773 - AO356_07375 0.82 +0.1 1,635,773 - AO356_07375 0.82 +0.1 1,635,773 - AO356_07375 0.82 +0.2 1,635,914 - +1.0 1,635,981 + +0.3 1,635,981 + -0.0 1,635,983 + +0.3 1,635,983 + -0.6 1,635,983 + +0.0 1,635,983 + +0.0 1,635,983 + -1.1 1,635,983 + -0.9 1,635,983 + +0.7 1,635,983 + -0.3 1,635,983 + +2.5 1,635,983 + -0.5 1,635,983 + +0.4 1,635,983 + +0.5 1,635,984 - -0.2 1,635,984 - -0.6 1,635,984 - +0.9 1,635,984 - -0.1 1,635,984 - +0.0 1,635,984 - +0.9 1,635,984 - +0.4 1,635,984 - +0.9 1,635,984 - +0.7 1,636,016 + +0.5 1,636,016 + +0.3 1,636,016 + +0.5 1,636,016 + +0.4 1,636,017 - +0.2 1,636,017 - +0.7 1,636,017 - +0.7 1,636,017 - -0.1 1,636,017 - -1.6 1,636,017 - +0.2 1,636,017 - +0.1 1,636,017 - +0.1 1,636,022 + +0.1 1,636,022 + +0.1 1,636,022 + -0.3 1,636,023 - +0.6 1,636,023 - +0.1 1,636,023 - +0.3 1,636,023 - +0.1 1,636,023 - -1.3 1,636,192 + AO356_07380 0.11 -1.0 1,636,280 + AO356_07380 0.27 +0.4 1,636,280 + AO356_07380 0.27 +0.5 1,636,281 - AO356_07380 0.27 +0.0 1,636,281 - AO356_07380 0.27 +0.1 1,636,294 + AO356_07380 0.29 -0.5 1,636,294 + AO356_07380 0.29 -0.0 1,636,294 + AO356_07380 0.29 -0.2 1,636,295 - AO356_07380 0.30 +0.9 1,636,298 + AO356_07380 0.30 +0.7 1,636,299 - AO356_07380 0.30 -0.6 1,636,299 - AO356_07380 0.30 +0.5 1,636,299 - AO356_07380 0.30 +1.5 1,636,299 - AO356_07380 0.30 +0.0 1,636,299 - AO356_07380 0.30 +1.4 1,636,299 - AO356_07380 0.30 +0.2 1,636,299 - AO356_07380 0.30 +0.5 1,636,363 + AO356_07380 0.42 +0.7 1,636,363 + AO356_07380 0.42 +1.5 1,636,364 - AO356_07380 0.42 +0.6 1,636,364 - AO356_07380 0.42 -0.1
Or see this region's nucleotide sequence