Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06245

Experiment: 4C survival; 360 hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_06240 and AO356_06245 are separated by 472 nucleotidesAO356_06245 and AO356_06250 are separated by 48 nucleotides AO356_06240: AO356_06240 - peptide chain release factor 2, at 1,381,995 to 1,382,876 _06240 AO356_06245: AO356_06245 - diguanylate cyclase, at 1,383,349 to 1,384,350 _06245 AO356_06250: AO356_06250 - chemotaxis protein CheY, at 1,384,399 to 1,385,409 _06250 Position (kb) 1383 1384 1385Strain fitness (log2 ratio) -2 -1 0 1 2at 1383.135 kb on - strandat 1383.140 kb on - strandat 1383.140 kb on - strandat 1383.140 kb on - strandat 1383.140 kb on - strandat 1383.140 kb on - strandat 1383.140 kb on - strandat 1383.140 kb on - strandat 1383.140 kb on - strandat 1383.140 kb on - strandat 1383.140 kb on - strandat 1383.209 kb on + strandat 1383.313 kb on + strandat 1383.347 kb on + strandat 1383.347 kb on + strandat 1383.347 kb on + strandat 1383.348 kb on - strandat 1383.348 kb on - strandat 1383.348 kb on - strandat 1383.348 kb on - strandat 1383.348 kb on - strandat 1383.350 kb on + strandat 1383.350 kb on + strandat 1383.350 kb on + strandat 1383.351 kb on - strandat 1383.351 kb on - strandat 1383.351 kb on - strandat 1383.370 kb on - strandat 1383.370 kb on - strandat 1383.392 kb on + strandat 1383.713 kb on + strand, within AO356_06245at 1383.713 kb on + strand, within AO356_06245at 1383.714 kb on - strand, within AO356_06245at 1383.714 kb on - strand, within AO356_06245at 1383.714 kb on - strand, within AO356_06245at 1383.725 kb on + strand, within AO356_06245at 1383.725 kb on + strand, within AO356_06245at 1383.725 kb on + strand, within AO356_06245at 1383.726 kb on - strand, within AO356_06245at 1383.726 kb on - strand, within AO356_06245at 1383.797 kb on + strand, within AO356_06245at 1383.797 kb on + strand, within AO356_06245at 1383.797 kb on + strand, within AO356_06245at 1383.798 kb on - strand, within AO356_06245at 1383.798 kb on - strand, within AO356_06245at 1383.912 kb on - strand, within AO356_06245at 1383.941 kb on + strand, within AO356_06245at 1383.941 kb on + strand, within AO356_06245at 1383.941 kb on + strand, within AO356_06245at 1383.941 kb on + strand, within AO356_06245at 1383.941 kb on + strand, within AO356_06245at 1383.941 kb on + strand, within AO356_06245at 1383.942 kb on - strand, within AO356_06245at 1383.942 kb on - strand, within AO356_06245at 1383.942 kb on - strand, within AO356_06245at 1383.942 kb on - strand, within AO356_06245at 1383.957 kb on - strand, within AO356_06245at 1384.005 kb on - strand, within AO356_06245at 1384.080 kb on + strand, within AO356_06245at 1384.101 kb on + strand, within AO356_06245at 1384.102 kb on - strand, within AO356_06245at 1384.176 kb on + strand, within AO356_06245at 1384.177 kb on - strand, within AO356_06245at 1384.177 kb on - strand, within AO356_06245at 1384.361 kb on + strandat 1384.362 kb on - strandat 1384.362 kb on - strandat 1384.362 kb on - strandat 1384.362 kb on - strandat 1384.452 kb on + strandat 1384.452 kb on + strandat 1384.496 kb on + strandat 1384.496 kb on + strandat 1384.497 kb on - strandat 1384.597 kb on + strand, within AO356_06250at 1384.597 kb on + strand, within AO356_06250at 1384.622 kb on + strand, within AO356_06250at 1384.622 kb on + strand, within AO356_06250at 1384.974 kb on + strand, within AO356_06250at 1384.974 kb on + strand, within AO356_06250at 1385.276 kb on + strand, within AO356_06250at 1385.276 kb on + strand, within AO356_06250at 1385.276 kb on + strand, within AO356_06250at 1385.277 kb on - strand, within AO356_06250

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 360 hrs
remove
1,383,135 - -0.7
1,383,140 - +0.1
1,383,140 - +1.3
1,383,140 - +0.1
1,383,140 - +0.2
1,383,140 - +0.7
1,383,140 - +0.1
1,383,140 - +2.5
1,383,140 - -1.4
1,383,140 - +0.7
1,383,140 - -0.4
1,383,209 + -0.7
1,383,313 + +0.0
1,383,347 + +0.2
1,383,347 + -0.3
1,383,347 + -0.4
1,383,348 - +0.1
1,383,348 - +0.1
1,383,348 - +0.9
1,383,348 - -0.1
1,383,348 - -0.0
1,383,350 + +0.4
1,383,350 + +0.5
1,383,350 + +0.9
1,383,351 - +0.7
1,383,351 - +1.2
1,383,351 - -0.6
1,383,370 - -0.9
1,383,370 - -1.0
1,383,392 + +1.4
1,383,713 + AO356_06245 0.36 +1.0
1,383,713 + AO356_06245 0.36 +0.8
1,383,714 - AO356_06245 0.36 -0.1
1,383,714 - AO356_06245 0.36 -0.7
1,383,714 - AO356_06245 0.36 +0.1
1,383,725 + AO356_06245 0.38 +2.7
1,383,725 + AO356_06245 0.38 +0.2
1,383,725 + AO356_06245 0.38 -0.1
1,383,726 - AO356_06245 0.38 -0.1
1,383,726 - AO356_06245 0.38 +0.1
1,383,797 + AO356_06245 0.45 -0.8
1,383,797 + AO356_06245 0.45 +2.0
1,383,797 + AO356_06245 0.45 -0.2
1,383,798 - AO356_06245 0.45 -0.5
1,383,798 - AO356_06245 0.45 -0.4
1,383,912 - AO356_06245 0.56 +0.6
1,383,941 + AO356_06245 0.59 -0.7
1,383,941 + AO356_06245 0.59 +0.3
1,383,941 + AO356_06245 0.59 -0.6
1,383,941 + AO356_06245 0.59 -0.9
1,383,941 + AO356_06245 0.59 -1.8
1,383,941 + AO356_06245 0.59 -0.2
1,383,942 - AO356_06245 0.59 -0.4
1,383,942 - AO356_06245 0.59 +0.5
1,383,942 - AO356_06245 0.59 +0.4
1,383,942 - AO356_06245 0.59 -0.2
1,383,957 - AO356_06245 0.61 -0.2
1,384,005 - AO356_06245 0.65 -0.6
1,384,080 + AO356_06245 0.73 -1.2
1,384,101 + AO356_06245 0.75 -0.7
1,384,102 - AO356_06245 0.75 +0.9
1,384,176 + AO356_06245 0.83 -0.4
1,384,177 - AO356_06245 0.83 -0.2
1,384,177 - AO356_06245 0.83 -0.1
1,384,361 + +0.7
1,384,362 - +1.3
1,384,362 - -0.3
1,384,362 - +0.2
1,384,362 - -0.0
1,384,452 + -0.3
1,384,452 + -0.8
1,384,496 + -0.9
1,384,496 + +0.1
1,384,497 - -1.2
1,384,597 + AO356_06250 0.20 -0.3
1,384,597 + AO356_06250 0.20 -0.7
1,384,622 + AO356_06250 0.22 -0.4
1,384,622 + AO356_06250 0.22 -0.6
1,384,974 + AO356_06250 0.57 +0.1
1,384,974 + AO356_06250 0.57 -0.7
1,385,276 + AO356_06250 0.87 -0.1
1,385,276 + AO356_06250 0.87 -0.1
1,385,276 + AO356_06250 0.87 -1.6
1,385,277 - AO356_06250 0.87 -1.1

Or see this region's nucleotide sequence