Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05870

Experiment: 4C survival; 360 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05865 and AO356_05870 are separated by 536 nucleotidesAO356_05870 and AO356_05875 are separated by 702 nucleotides AO356_05865: AO356_05865 - transcriptional regulator, at 1,298,651 to 1,299,385 _05865 AO356_05870: AO356_05870 - hypothetical protein, at 1,299,922 to 1,300,263 _05870 AO356_05875: AO356_05875 - DNA mismatch repair protein MutS, at 1,300,966 to 1,303,545 _05875 Position (kb) 1299 1300 1301Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1299.436 kb on - strandat 1299.440 kb on - strandat 1299.566 kb on + strandat 1299.621 kb on + strandat 1299.621 kb on + strandat 1299.621 kb on + strandat 1299.622 kb on - strandat 1299.643 kb on + strandat 1299.643 kb on + strandat 1299.644 kb on - strandat 1299.729 kb on - strandat 1299.773 kb on + strandat 1299.773 kb on + strandat 1299.774 kb on - strandat 1299.774 kb on - strandat 1299.774 kb on - strandat 1299.774 kb on - strandat 1299.774 kb on - strandat 1299.780 kb on - strandat 1299.780 kb on - strandat 1299.780 kb on - strandat 1299.797 kb on + strandat 1299.797 kb on + strandat 1299.797 kb on + strandat 1299.798 kb on - strandat 1299.798 kb on - strandat 1299.798 kb on - strandat 1299.798 kb on - strandat 1299.851 kb on + strandat 1299.860 kb on + strandat 1299.918 kb on + strandat 1299.918 kb on + strandat 1299.918 kb on + strandat 1299.918 kb on + strandat 1299.918 kb on + strandat 1299.918 kb on + strandat 1299.918 kb on + strandat 1299.918 kb on + strandat 1299.919 kb on - strandat 1299.919 kb on - strandat 1299.919 kb on - strandat 1299.919 kb on - strandat 1299.919 kb on - strandat 1300.009 kb on + strand, within AO356_05870at 1300.009 kb on + strand, within AO356_05870at 1300.009 kb on + strand, within AO356_05870at 1300.009 kb on + strand, within AO356_05870at 1300.009 kb on + strand, within AO356_05870at 1300.010 kb on - strand, within AO356_05870at 1300.010 kb on - strand, within AO356_05870at 1300.012 kb on + strand, within AO356_05870at 1300.012 kb on + strand, within AO356_05870at 1300.012 kb on + strand, within AO356_05870at 1300.013 kb on - strand, within AO356_05870at 1300.013 kb on - strand, within AO356_05870at 1300.013 kb on - strand, within AO356_05870at 1300.013 kb on - strand, within AO356_05870at 1300.013 kb on - strand, within AO356_05870at 1300.013 kb on - strand, within AO356_05870at 1300.183 kb on - strand, within AO356_05870at 1300.183 kb on - strand, within AO356_05870at 1300.262 kb on - strandat 1300.262 kb on - strandat 1300.285 kb on + strandat 1300.286 kb on - strandat 1300.343 kb on + strandat 1300.344 kb on - strandat 1300.344 kb on - strandat 1300.393 kb on + strandat 1300.393 kb on + strandat 1300.394 kb on - strandat 1300.394 kb on - strandat 1300.814 kb on + strandat 1300.814 kb on + strandat 1300.814 kb on + strandat 1300.814 kb on + strandat 1300.841 kb on - strandat 1300.841 kb on - strandat 1300.842 kb on + strandat 1300.842 kb on + strandat 1300.842 kb on + strandat 1300.842 kb on + strandat 1300.842 kb on + strandat 1300.842 kb on + strandat 1300.842 kb on + strandat 1300.842 kb on + strandat 1300.843 kb on - strandat 1300.843 kb on - strandat 1300.843 kb on - strandat 1300.843 kb on - strandat 1300.843 kb on - strandat 1300.843 kb on - strandat 1300.843 kb on - strandat 1300.843 kb on - strandat 1300.885 kb on + strandat 1300.886 kb on - strandat 1300.971 kb on + strandat 1300.971 kb on + strandat 1300.972 kb on - strandat 1300.972 kb on - strandat 1300.972 kb on - strandat 1300.972 kb on - strandat 1301.018 kb on - strandat 1301.018 kb on - strandat 1301.059 kb on + strandat 1301.059 kb on + strandat 1301.077 kb on + strandat 1301.078 kb on - strandat 1301.078 kb on - strandat 1301.078 kb on - strandat 1301.089 kb on + strandat 1301.090 kb on - strandat 1301.090 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 360 hrs
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1,299,436 - +1.6
1,299,440 - +0.0
1,299,566 + +1.0
1,299,621 + -1.3
1,299,621 + +0.5
1,299,621 + -0.5
1,299,622 - +0.9
1,299,643 + -0.4
1,299,643 + -1.2
1,299,644 - +0.7
1,299,729 - +0.4
1,299,773 + -1.3
1,299,773 + -0.8
1,299,774 - +0.9
1,299,774 - +0.1
1,299,774 - -0.8
1,299,774 - -0.3
1,299,774 - -0.2
1,299,780 - +0.4
1,299,780 - +0.8
1,299,780 - +2.1
1,299,797 + -0.7
1,299,797 + +0.7
1,299,797 + +5.0
1,299,798 - +1.2
1,299,798 - +0.3
1,299,798 - -0.1
1,299,798 - -0.2
1,299,851 + +4.2
1,299,860 + +4.0
1,299,918 + +0.2
1,299,918 + -1.3
1,299,918 + +0.9
1,299,918 + -1.4
1,299,918 + -0.7
1,299,918 + +0.5
1,299,918 + -0.7
1,299,918 + +0.1
1,299,919 - -0.0
1,299,919 - +1.1
1,299,919 - +0.5
1,299,919 - -0.9
1,299,919 - +0.1
1,300,009 + AO356_05870 0.25 +0.8
1,300,009 + AO356_05870 0.25 -0.2
1,300,009 + AO356_05870 0.25 +0.3
1,300,009 + AO356_05870 0.25 +0.3
1,300,009 + AO356_05870 0.25 +1.6
1,300,010 - AO356_05870 0.26 +0.1
1,300,010 - AO356_05870 0.26 +1.0
1,300,012 + AO356_05870 0.26 +0.8
1,300,012 + AO356_05870 0.26 +0.4
1,300,012 + AO356_05870 0.26 +0.4
1,300,013 - AO356_05870 0.27 -0.2
1,300,013 - AO356_05870 0.27 +0.3
1,300,013 - AO356_05870 0.27 +0.2
1,300,013 - AO356_05870 0.27 +0.0
1,300,013 - AO356_05870 0.27 +0.2
1,300,013 - AO356_05870 0.27 +0.2
1,300,183 - AO356_05870 0.76 -0.9
1,300,183 - AO356_05870 0.76 -0.6
1,300,262 - +0.2
1,300,262 - -0.2
1,300,285 + +0.6
1,300,286 - +1.2
1,300,343 + +0.5
1,300,344 - -0.8
1,300,344 - +0.9
1,300,393 + +0.1
1,300,393 + +0.8
1,300,394 - +0.0
1,300,394 - +0.4
1,300,814 + +0.3
1,300,814 + +3.1
1,300,814 + +0.2
1,300,814 + +0.2
1,300,841 - +0.5
1,300,841 - +0.1
1,300,842 + +1.4
1,300,842 + +0.4
1,300,842 + +0.9
1,300,842 + +0.4
1,300,842 + -0.3
1,300,842 + -1.1
1,300,842 + +0.4
1,300,842 + +1.0
1,300,843 - -0.4
1,300,843 - +0.1
1,300,843 - -0.6
1,300,843 - +0.2
1,300,843 - -0.1
1,300,843 - +0.3
1,300,843 - -0.5
1,300,843 - +0.6
1,300,885 + -0.1
1,300,886 - -2.0
1,300,971 + +0.5
1,300,971 + -0.2
1,300,972 - +0.6
1,300,972 - +0.3
1,300,972 - +1.4
1,300,972 - +0.7
1,301,018 - +1.3
1,301,018 - -1.6
1,301,059 + +0.5
1,301,059 + +0.2
1,301,077 + +0.4
1,301,078 - +0.0
1,301,078 - -0.6
1,301,078 - +0.1
1,301,089 + +1.2
1,301,090 - -0.7
1,301,090 - -0.0

Or see this region's nucleotide sequence