Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02455

Experiment: 4C survival; 360 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02445 and AO356_02450 overlap by 1 nucleotidesAO356_02450 and AO356_02455 are separated by 205 nucleotidesAO356_02455 and AO356_02460 are separated by 11 nucleotidesAO356_02460 and AO356_02465 are separated by 178 nucleotides AO356_02445: AO356_02445 - prevent-host-death protein, at 532,050 to 532,304 _02445 AO356_02450: AO356_02450 - twitching motility protein PilT, at 532,304 to 532,726 _02450 AO356_02455: AO356_02455 - (Fe-S)-binding protein, at 532,932 to 534,347 _02455 AO356_02460: AO356_02460 - hypothetical protein, at 534,359 to 534,898 _02460 AO356_02465: AO356_02465 - carbonate dehydratase, at 535,077 to 537,527 _02465 Position (kb) 532 533 534 535Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 531.986 kb on + strandat 532.035 kb on - strandat 532.064 kb on + strandat 532.064 kb on + strandat 532.065 kb on - strandat 532.065 kb on - strandat 532.168 kb on + strand, within AO356_02445at 532.169 kb on - strand, within AO356_02445at 532.183 kb on - strand, within AO356_02445at 532.183 kb on - strand, within AO356_02445at 532.307 kb on + strandat 532.307 kb on + strandat 532.307 kb on + strandat 532.308 kb on - strandat 532.308 kb on - strandat 532.308 kb on - strandat 532.308 kb on - strandat 532.308 kb on - strandat 532.308 kb on - strandat 532.357 kb on + strand, within AO356_02450at 532.365 kb on + strand, within AO356_02450at 532.365 kb on + strand, within AO356_02450at 532.365 kb on + strand, within AO356_02450at 532.366 kb on - strand, within AO356_02450at 532.403 kb on + strand, within AO356_02450at 532.403 kb on + strand, within AO356_02450at 532.403 kb on + strand, within AO356_02450at 532.404 kb on - strand, within AO356_02450at 532.404 kb on - strand, within AO356_02450at 532.423 kb on - strand, within AO356_02450at 532.740 kb on - strandat 532.773 kb on - strandat 532.846 kb on + strandat 532.847 kb on - strandat 532.891 kb on + strandat 532.891 kb on + strandat 532.891 kb on + strandat 532.952 kb on - strandat 533.001 kb on + strandat 533.001 kb on + strandat 533.002 kb on - strandat 533.022 kb on + strandat 533.086 kb on + strand, within AO356_02455at 533.086 kb on + strand, within AO356_02455at 533.086 kb on + strand, within AO356_02455at 533.091 kb on + strand, within AO356_02455at 533.091 kb on + strand, within AO356_02455at 533.091 kb on + strand, within AO356_02455at 533.091 kb on + strand, within AO356_02455at 533.091 kb on + strand, within AO356_02455at 533.256 kb on + strand, within AO356_02455at 533.257 kb on - strand, within AO356_02455at 533.280 kb on + strand, within AO356_02455at 533.562 kb on + strand, within AO356_02455at 533.562 kb on + strand, within AO356_02455at 533.601 kb on + strand, within AO356_02455at 533.601 kb on + strand, within AO356_02455at 533.601 kb on + strand, within AO356_02455at 533.601 kb on + strand, within AO356_02455at 533.601 kb on + strand, within AO356_02455at 533.601 kb on + strand, within AO356_02455at 533.601 kb on + strand, within AO356_02455at 533.602 kb on - strand, within AO356_02455at 533.602 kb on - strand, within AO356_02455at 533.602 kb on - strand, within AO356_02455at 533.664 kb on + strand, within AO356_02455at 533.664 kb on + strand, within AO356_02455at 533.715 kb on + strand, within AO356_02455at 533.715 kb on + strand, within AO356_02455at 533.716 kb on - strand, within AO356_02455at 533.889 kb on + strand, within AO356_02455at 533.889 kb on + strand, within AO356_02455at 533.889 kb on + strand, within AO356_02455at 534.048 kb on + strand, within AO356_02455at 534.084 kb on + strand, within AO356_02455at 534.122 kb on + strand, within AO356_02455at 534.122 kb on + strand, within AO356_02455at 534.122 kb on + strand, within AO356_02455at 534.122 kb on + strand, within AO356_02455at 534.122 kb on + strand, within AO356_02455at 534.122 kb on + strand, within AO356_02455at 534.123 kb on - strand, within AO356_02455at 534.126 kb on + strand, within AO356_02455at 534.126 kb on + strand, within AO356_02455at 534.126 kb on + strand, within AO356_02455at 534.126 kb on + strand, within AO356_02455at 534.126 kb on + strand, within AO356_02455at 534.126 kb on + strand, within AO356_02455at 534.126 kb on + strand, within AO356_02455at 534.127 kb on - strand, within AO356_02455at 534.127 kb on - strand, within AO356_02455at 534.204 kb on + strand, within AO356_02455at 534.301 kb on + strandat 534.301 kb on + strandat 534.301 kb on + strandat 534.301 kb on + strandat 534.301 kb on + strandat 534.301 kb on + strandat 534.389 kb on + strandat 534.503 kb on + strand, within AO356_02460at 534.504 kb on - strand, within AO356_02460at 534.504 kb on - strand, within AO356_02460at 534.896 kb on + strandat 534.896 kb on + strandat 534.896 kb on + strandat 534.988 kb on + strandat 535.033 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 360 hrs
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531,986 + +0.5
532,035 - +0.1
532,064 + -1.5
532,064 + -1.2
532,065 - +0.0
532,065 - +0.8
532,168 + AO356_02445 0.46 -0.2
532,169 - AO356_02445 0.47 -0.8
532,183 - AO356_02445 0.52 -1.6
532,183 - AO356_02445 0.52 +0.3
532,307 + +0.7
532,307 + -1.4
532,307 + +1.0
532,308 - +0.5
532,308 - +0.3
532,308 - -0.7
532,308 - +1.0
532,308 - +0.8
532,308 - +0.1
532,357 + AO356_02450 0.13 +0.3
532,365 + AO356_02450 0.14 +0.1
532,365 + AO356_02450 0.14 -1.0
532,365 + AO356_02450 0.14 -1.1
532,366 - AO356_02450 0.15 +0.9
532,403 + AO356_02450 0.23 +0.1
532,403 + AO356_02450 0.23 +0.3
532,403 + AO356_02450 0.23 -0.2
532,404 - AO356_02450 0.24 +0.8
532,404 - AO356_02450 0.24 -0.9
532,423 - AO356_02450 0.28 -1.4
532,740 - -1.3
532,773 - -0.0
532,846 + +0.4
532,847 - -2.5
532,891 + -1.0
532,891 + -0.0
532,891 + -0.6
532,952 - -1.1
533,001 + -0.9
533,001 + -1.5
533,002 - +0.6
533,022 + -2.3
533,086 + AO356_02455 0.11 -2.8
533,086 + AO356_02455 0.11 -0.5
533,086 + AO356_02455 0.11 -0.1
533,091 + AO356_02455 0.11 +0.2
533,091 + AO356_02455 0.11 -2.1
533,091 + AO356_02455 0.11 -1.3
533,091 + AO356_02455 0.11 -0.9
533,091 + AO356_02455 0.11 -0.5
533,256 + AO356_02455 0.23 -3.0
533,257 - AO356_02455 0.23 -1.3
533,280 + AO356_02455 0.25 -0.4
533,562 + AO356_02455 0.44 +1.1
533,562 + AO356_02455 0.44 +0.1
533,601 + AO356_02455 0.47 -1.2
533,601 + AO356_02455 0.47 -0.6
533,601 + AO356_02455 0.47 -0.1
533,601 + AO356_02455 0.47 -1.9
533,601 + AO356_02455 0.47 +0.8
533,601 + AO356_02455 0.47 -0.0
533,601 + AO356_02455 0.47 +0.4
533,602 - AO356_02455 0.47 -1.3
533,602 - AO356_02455 0.47 -1.2
533,602 - AO356_02455 0.47 -1.0
533,664 + AO356_02455 0.52 -0.8
533,664 + AO356_02455 0.52 -2.4
533,715 + AO356_02455 0.55 -0.5
533,715 + AO356_02455 0.55 -0.0
533,716 - AO356_02455 0.55 +0.3
533,889 + AO356_02455 0.68 -0.8
533,889 + AO356_02455 0.68 +0.8
533,889 + AO356_02455 0.68 -0.6
534,048 + AO356_02455 0.79 -1.4
534,084 + AO356_02455 0.81 -0.8
534,122 + AO356_02455 0.84 +1.6
534,122 + AO356_02455 0.84 +0.0
534,122 + AO356_02455 0.84 +0.8
534,122 + AO356_02455 0.84 -0.4
534,122 + AO356_02455 0.84 +0.9
534,122 + AO356_02455 0.84 -0.5
534,123 - AO356_02455 0.84 -1.0
534,126 + AO356_02455 0.84 -1.4
534,126 + AO356_02455 0.84 -0.7
534,126 + AO356_02455 0.84 -0.9
534,126 + AO356_02455 0.84 -0.3
534,126 + AO356_02455 0.84 +0.2
534,126 + AO356_02455 0.84 -1.2
534,126 + AO356_02455 0.84 -1.1
534,127 - AO356_02455 0.84 -0.4
534,127 - AO356_02455 0.84 -0.4
534,204 + AO356_02455 0.90 -0.4
534,301 + +0.8
534,301 + +0.2
534,301 + -0.0
534,301 + -0.1
534,301 + -0.4
534,301 + -2.2
534,389 + -2.5
534,503 + AO356_02460 0.27 -2.1
534,504 - AO356_02460 0.27 -0.0
534,504 - AO356_02460 0.27 -1.7
534,896 + +0.7
534,896 + +2.4
534,896 + +1.5
534,988 + -1.4
535,033 + -0.2

Or see this region's nucleotide sequence