Experiment: 4C survival; 360 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02405 and AO356_02410 are separated by 10 nucleotides AO356_02410 and AO356_02415 are separated by 5 nucleotides AO356_02415 and AO356_02420 overlap by 4 nucleotides
AO356_02405: AO356_02405 - cytochrome C oxidase Cbb3, at 524,997 to 526,421
_02405
AO356_02410: AO356_02410 - cytochrome C oxidase Cbb3, at 526,432 to 527,040
_02410
AO356_02415: AO356_02415 - cytochrome C oxidase, at 527,046 to 527,246
_02415
AO356_02420: AO356_02420 - cytochrome C oxidase Cbb3, at 527,243 to 528,196
_02420
Position (kb) 526
527
528 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 525.468 kb on + strand, within AO356_02405 at 525.468 kb on + strand, within AO356_02405 at 525.468 kb on + strand, within AO356_02405 at 525.468 kb on + strand, within AO356_02405 at 525.468 kb on + strand, within AO356_02405 at 525.468 kb on + strand, within AO356_02405 at 525.469 kb on - strand, within AO356_02405 at 525.469 kb on - strand, within AO356_02405 at 525.469 kb on - strand, within AO356_02405 at 525.564 kb on + strand, within AO356_02405 at 525.564 kb on + strand, within AO356_02405 at 525.565 kb on - strand, within AO356_02405 at 525.573 kb on + strand, within AO356_02405 at 525.573 kb on + strand, within AO356_02405 at 525.574 kb on - strand, within AO356_02405 at 525.574 kb on - strand, within AO356_02405 at 525.663 kb on + strand, within AO356_02405 at 525.663 kb on + strand, within AO356_02405 at 525.664 kb on - strand, within AO356_02405 at 525.664 kb on - strand, within AO356_02405 at 525.664 kb on - strand, within AO356_02405 at 525.664 kb on - strand, within AO356_02405 at 525.664 kb on - strand, within AO356_02405 at 525.664 kb on - strand, within AO356_02405 at 525.664 kb on - strand, within AO356_02405 at 525.666 kb on + strand, within AO356_02405 at 525.666 kb on + strand, within AO356_02405 at 525.666 kb on + strand, within AO356_02405 at 525.667 kb on - strand, within AO356_02405 at 525.747 kb on + strand, within AO356_02405 at 525.747 kb on + strand, within AO356_02405 at 525.777 kb on + strand, within AO356_02405 at 525.893 kb on + strand, within AO356_02405 at 525.893 kb on + strand, within AO356_02405 at 525.945 kb on + strand, within AO356_02405 at 525.945 kb on + strand, within AO356_02405 at 525.946 kb on - strand, within AO356_02405 at 525.946 kb on - strand, within AO356_02405 at 526.034 kb on - strand, within AO356_02405 at 526.034 kb on - strand, within AO356_02405 at 526.034 kb on - strand, within AO356_02405 at 526.084 kb on - strand, within AO356_02405 at 526.179 kb on + strand, within AO356_02405 at 526.179 kb on + strand, within AO356_02405 at 526.179 kb on + strand, within AO356_02405 at 526.179 kb on + strand, within AO356_02405 at 526.180 kb on - strand, within AO356_02405 at 526.180 kb on - strand, within AO356_02405 at 526.180 kb on - strand, within AO356_02405 at 526.258 kb on - strand, within AO356_02405 at 526.354 kb on - strand at 526.380 kb on + strand at 526.574 kb on - strand, within AO356_02410 at 526.607 kb on - strand, within AO356_02410 at 526.607 kb on - strand, within AO356_02410 at 526.607 kb on - strand, within AO356_02410 at 526.607 kb on - strand, within AO356_02410 at 526.607 kb on - strand, within AO356_02410 at 526.607 kb on - strand, within AO356_02410 at 526.804 kb on + strand, within AO356_02410 at 526.805 kb on - strand, within AO356_02410 at 526.927 kb on + strand, within AO356_02410 at 526.927 kb on + strand, within AO356_02410 at 527.000 kb on - strand at 527.261 kb on - strand at 527.852 kb on + strand, within AO356_02420 at 527.856 kb on + strand, within AO356_02420 at 527.856 kb on + strand, within AO356_02420 at 527.856 kb on + strand, within AO356_02420 at 527.856 kb on + strand, within AO356_02420 at 527.856 kb on + strand, within AO356_02420 at 527.856 kb on + strand, within AO356_02420 at 527.857 kb on - strand, within AO356_02420 at 527.857 kb on - strand, within AO356_02420 at 527.857 kb on - strand, within AO356_02420 at 527.857 kb on - strand, within AO356_02420 at 528.021 kb on - strand, within AO356_02420 at 528.021 kb on - strand, within AO356_02420
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 360 hrs remove 525,468 + AO356_02405 0.33 -0.2 525,468 + AO356_02405 0.33 -3.0 525,468 + AO356_02405 0.33 -1.3 525,468 + AO356_02405 0.33 -1.5 525,468 + AO356_02405 0.33 -1.5 525,468 + AO356_02405 0.33 +0.4 525,469 - AO356_02405 0.33 -0.9 525,469 - AO356_02405 0.33 -0.0 525,469 - AO356_02405 0.33 -1.0 525,564 + AO356_02405 0.40 -2.3 525,564 + AO356_02405 0.40 -0.7 525,565 - AO356_02405 0.40 -1.1 525,573 + AO356_02405 0.40 -1.3 525,573 + AO356_02405 0.40 -1.5 525,574 - AO356_02405 0.40 +0.7 525,574 - AO356_02405 0.40 -1.3 525,663 + AO356_02405 0.47 -0.7 525,663 + AO356_02405 0.47 -0.0 525,664 - AO356_02405 0.47 -1.0 525,664 - AO356_02405 0.47 -0.8 525,664 - AO356_02405 0.47 -1.2 525,664 - AO356_02405 0.47 -2.4 525,664 - AO356_02405 0.47 -1.9 525,664 - AO356_02405 0.47 -1.6 525,664 - AO356_02405 0.47 -0.6 525,666 + AO356_02405 0.47 -1.0 525,666 + AO356_02405 0.47 -0.6 525,666 + AO356_02405 0.47 -1.7 525,667 - AO356_02405 0.47 -0.5 525,747 + AO356_02405 0.53 -1.7 525,747 + AO356_02405 0.53 +0.1 525,777 + AO356_02405 0.55 -0.8 525,893 + AO356_02405 0.63 -1.1 525,893 + AO356_02405 0.63 -0.8 525,945 + AO356_02405 0.67 -0.0 525,945 + AO356_02405 0.67 -2.5 525,946 - AO356_02405 0.67 -0.5 525,946 - AO356_02405 0.67 -1.3 526,034 - AO356_02405 0.73 -1.0 526,034 - AO356_02405 0.73 -2.1 526,034 - AO356_02405 0.73 -0.6 526,084 - AO356_02405 0.76 -2.1 526,179 + AO356_02405 0.83 +1.0 526,179 + AO356_02405 0.83 -1.3 526,179 + AO356_02405 0.83 -1.5 526,179 + AO356_02405 0.83 -0.9 526,180 - AO356_02405 0.83 -2.7 526,180 - AO356_02405 0.83 -0.4 526,180 - AO356_02405 0.83 -1.9 526,258 - AO356_02405 0.88 -2.0 526,354 - -2.6 526,380 + +0.6 526,574 - AO356_02410 0.23 -0.6 526,607 - AO356_02410 0.29 -1.5 526,607 - AO356_02410 0.29 -1.1 526,607 - AO356_02410 0.29 -1.6 526,607 - AO356_02410 0.29 +1.0 526,607 - AO356_02410 0.29 -2.0 526,607 - AO356_02410 0.29 -0.8 526,804 + AO356_02410 0.61 -1.5 526,805 - AO356_02410 0.61 -1.9 526,927 + AO356_02410 0.81 -1.8 526,927 + AO356_02410 0.81 -2.7 527,000 - -0.5 527,261 - -0.2 527,852 + AO356_02420 0.64 -0.9 527,856 + AO356_02420 0.64 -1.6 527,856 + AO356_02420 0.64 -0.7 527,856 + AO356_02420 0.64 -2.5 527,856 + AO356_02420 0.64 -2.4 527,856 + AO356_02420 0.64 -1.4 527,856 + AO356_02420 0.64 -0.5 527,857 - AO356_02420 0.64 -1.5 527,857 - AO356_02420 0.64 -3.1 527,857 - AO356_02420 0.64 -2.8 527,857 - AO356_02420 0.64 -1.8 528,021 - AO356_02420 0.82 -1.8 528,021 - AO356_02420 0.82 -1.1
Or see this region's nucleotide sequence