Experiment: 4C survival; 360 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01435 and AO356_01440 are separated by 98 nucleotides AO356_01440 and AO356_01445 are separated by 76 nucleotides AO356_01445 and AO356_01450 are separated by 294 nucleotides
AO356_01435: AO356_01435 - LysR family transcriptional regulator, at 328,539 to 329,468
_01435
AO356_01440: AO356_01440 - hypothetical protein, at 329,567 to 330,331
_01440
AO356_01445: AO356_01445 - hypothetical protein, at 330,408 to 330,995
_01445
AO356_01450: AO356_01450 - transposase, at 331,290 to 331,595
_01450
Position (kb) 329
330
331 Strain fitness (log2 ratio) -1
0
1
2 at 328.858 kb on + strand, within AO356_01435 at 329.049 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.329 kb on - strand, within AO356_01435 at 329.329 kb on - strand, within AO356_01435 at 329.329 kb on - strand, within AO356_01435 at 329.356 kb on - strand, within AO356_01435 at 329.356 kb on - strand, within AO356_01435 at 329.358 kb on + strand, within AO356_01435 at 329.359 kb on - strand, within AO356_01435 at 329.359 kb on - strand, within AO356_01435 at 329.533 kb on - strand at 329.789 kb on + strand, within AO356_01440 at 329.789 kb on + strand, within AO356_01440 at 329.789 kb on + strand, within AO356_01440 at 329.790 kb on - strand, within AO356_01440 at 329.790 kb on - strand, within AO356_01440 at 329.939 kb on + strand, within AO356_01440 at 329.940 kb on - strand, within AO356_01440 at 329.940 kb on - strand, within AO356_01440 at 330.003 kb on + strand, within AO356_01440 at 330.004 kb on - strand, within AO356_01440 at 330.004 kb on - strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.423 kb on - strand at 330.572 kb on + strand, within AO356_01445 at 330.573 kb on - strand, within AO356_01445 at 330.636 kb on + strand, within AO356_01445 at 330.636 kb on + strand, within AO356_01445 at 330.636 kb on + strand, within AO356_01445 at 330.636 kb on + strand, within AO356_01445 at 330.636 kb on + strand, within AO356_01445 at 330.636 kb on + strand, within AO356_01445 at 330.636 kb on + strand, within AO356_01445 at 330.637 kb on - strand, within AO356_01445 at 330.637 kb on - strand, within AO356_01445 at 330.637 kb on - strand, within AO356_01445 at 330.637 kb on - strand, within AO356_01445 at 330.637 kb on - strand, within AO356_01445 at 330.993 kb on + strand at 330.993 kb on + strand at 330.993 kb on + strand at 330.994 kb on - strand at 330.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 360 hrs remove 328,858 + AO356_01435 0.34 +0.1 329,049 + AO356_01435 0.55 +0.9 329,328 + AO356_01435 0.85 -1.0 329,328 + AO356_01435 0.85 -0.1 329,328 + AO356_01435 0.85 +0.6 329,328 + AO356_01435 0.85 -0.7 329,329 - AO356_01435 0.85 -0.3 329,329 - AO356_01435 0.85 -0.1 329,329 - AO356_01435 0.85 +0.4 329,356 - AO356_01435 0.88 -0.5 329,356 - AO356_01435 0.88 +0.2 329,358 + AO356_01435 0.88 +0.4 329,359 - AO356_01435 0.88 -0.1 329,359 - AO356_01435 0.88 -0.8 329,533 - +0.3 329,789 + AO356_01440 0.29 +1.1 329,789 + AO356_01440 0.29 +0.4 329,789 + AO356_01440 0.29 +0.2 329,790 - AO356_01440 0.29 +0.1 329,790 - AO356_01440 0.29 -0.6 329,939 + AO356_01440 0.49 +0.2 329,940 - AO356_01440 0.49 -0.2 329,940 - AO356_01440 0.49 +1.3 330,003 + AO356_01440 0.57 -1.0 330,004 - AO356_01440 0.57 +1.3 330,004 - AO356_01440 0.57 -0.4 330,188 + AO356_01440 0.81 +0.6 330,188 + AO356_01440 0.81 +0.5 330,188 + AO356_01440 0.81 -1.4 330,188 + AO356_01440 0.81 -0.3 330,188 + AO356_01440 0.81 +0.4 330,189 - AO356_01440 0.81 +1.1 330,189 - AO356_01440 0.81 +0.1 330,189 - AO356_01440 0.81 +0.2 330,189 - AO356_01440 0.81 +1.1 330,189 - AO356_01440 0.81 +2.6 330,189 - AO356_01440 0.81 +0.1 330,423 - -0.2 330,572 + AO356_01445 0.28 +0.7 330,573 - AO356_01445 0.28 -1.0 330,636 + AO356_01445 0.39 +0.7 330,636 + AO356_01445 0.39 -0.8 330,636 + AO356_01445 0.39 +0.5 330,636 + AO356_01445 0.39 -0.1 330,636 + AO356_01445 0.39 -0.4 330,636 + AO356_01445 0.39 -0.2 330,636 + AO356_01445 0.39 +0.2 330,637 - AO356_01445 0.39 +0.4 330,637 - AO356_01445 0.39 +0.3 330,637 - AO356_01445 0.39 +1.1 330,637 - AO356_01445 0.39 -0.1 330,637 - AO356_01445 0.39 +0.8 330,993 + +0.4 330,993 + +0.2 330,993 + -0.2 330,994 - +0.3 330,994 - +0.2
Or see this region's nucleotide sequence