Experiment: 4C survival; 360 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00150 and AO356_00155 are separated by 89 nucleotides AO356_00155 and AO356_00160 overlap by 4 nucleotides AO356_00160 and AO356_00165 are separated by 9 nucleotides
AO356_00150: AO356_00150 - ABC transporter substrate-binding protein, at 28,100 to 28,864
_00150
AO356_00155: AO356_00155 - pili assembly chaperone, at 28,954 to 29,496
_00155
AO356_00160: AO356_00160 - chemotaxis protein, at 29,493 to 30,164
_00160
AO356_00165: AO356_00165 - hypothetical protein, at 30,174 to 30,893
_00165
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1 at 28.042 kb on + strand at 28.052 kb on + strand at 28.053 kb on - strand at 28.188 kb on + strand, within AO356_00150 at 28.199 kb on + strand, within AO356_00150 at 28.200 kb on - strand, within AO356_00150 at 28.269 kb on + strand, within AO356_00150 at 28.269 kb on + strand, within AO356_00150 at 28.385 kb on + strand, within AO356_00150 at 28.385 kb on + strand, within AO356_00150 at 28.385 kb on + strand, within AO356_00150 at 28.386 kb on - strand, within AO356_00150 at 28.386 kb on - strand, within AO356_00150 at 28.493 kb on + strand, within AO356_00150 at 28.516 kb on + strand, within AO356_00150 at 28.548 kb on - strand, within AO356_00150 at 28.640 kb on - strand, within AO356_00150 at 28.669 kb on + strand, within AO356_00150 at 28.698 kb on - strand, within AO356_00150 at 28.733 kb on - strand, within AO356_00150 at 28.761 kb on - strand, within AO356_00150 at 28.761 kb on - strand, within AO356_00150 at 28.835 kb on + strand at 28.835 kb on + strand at 28.845 kb on + strand at 28.845 kb on + strand at 28.845 kb on + strand at 28.846 kb on - strand at 28.862 kb on + strand at 28.863 kb on - strand at 28.888 kb on + strand at 28.889 kb on - strand at 29.020 kb on - strand, within AO356_00155 at 29.022 kb on + strand, within AO356_00155 at 29.023 kb on - strand, within AO356_00155 at 29.023 kb on - strand, within AO356_00155 at 29.023 kb on - strand, within AO356_00155 at 29.127 kb on + strand, within AO356_00155 at 29.128 kb on - strand, within AO356_00155 at 29.128 kb on - strand, within AO356_00155 at 29.207 kb on + strand, within AO356_00155 at 29.208 kb on - strand, within AO356_00155 at 29.219 kb on + strand, within AO356_00155 at 29.236 kb on + strand, within AO356_00155 at 29.236 kb on + strand, within AO356_00155 at 29.236 kb on + strand, within AO356_00155 at 29.236 kb on + strand, within AO356_00155 at 29.236 kb on + strand, within AO356_00155 at 29.237 kb on - strand, within AO356_00155 at 29.237 kb on - strand, within AO356_00155 at 29.237 kb on - strand, within AO356_00155 at 29.286 kb on - strand, within AO356_00155 at 29.292 kb on - strand, within AO356_00155 at 29.292 kb on - strand, within AO356_00155 at 29.292 kb on - strand, within AO356_00155 at 29.346 kb on - strand, within AO356_00155 at 29.357 kb on + strand, within AO356_00155 at 29.358 kb on - strand, within AO356_00155 at 29.358 kb on - strand, within AO356_00155 at 29.568 kb on + strand, within AO356_00160 at 29.568 kb on + strand, within AO356_00160 at 29.578 kb on - strand, within AO356_00160 at 29.578 kb on - strand, within AO356_00160 at 29.620 kb on + strand, within AO356_00160 at 29.738 kb on + strand, within AO356_00160 at 29.738 kb on + strand, within AO356_00160 at 29.777 kb on - strand, within AO356_00160 at 30.029 kb on + strand, within AO356_00160 at 30.187 kb on + strand at 30.472 kb on + strand, within AO356_00165 at 30.473 kb on - strand, within AO356_00165
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 360 hrs remove 28,042 + -0.0 28,052 + -0.4 28,053 - +0.1 28,188 + AO356_00150 0.12 +0.3 28,199 + AO356_00150 0.13 +0.2 28,200 - AO356_00150 0.13 +0.3 28,269 + AO356_00150 0.22 -0.6 28,269 + AO356_00150 0.22 -0.5 28,385 + AO356_00150 0.37 +0.3 28,385 + AO356_00150 0.37 -1.2 28,385 + AO356_00150 0.37 +0.1 28,386 - AO356_00150 0.37 -0.3 28,386 - AO356_00150 0.37 -1.1 28,493 + AO356_00150 0.51 -0.3 28,516 + AO356_00150 0.54 -2.1 28,548 - AO356_00150 0.59 -0.4 28,640 - AO356_00150 0.71 -0.0 28,669 + AO356_00150 0.74 -0.3 28,698 - AO356_00150 0.78 +0.0 28,733 - AO356_00150 0.83 -0.1 28,761 - AO356_00150 0.86 -0.8 28,761 - AO356_00150 0.86 -0.7 28,835 + +0.9 28,835 + +0.8 28,845 + +0.3 28,845 + -0.5 28,845 + +0.5 28,846 - +0.0 28,862 + +0.1 28,863 - +0.6 28,888 + -0.6 28,889 - -0.0 29,020 - AO356_00155 0.12 +0.3 29,022 + AO356_00155 0.13 +0.1 29,023 - AO356_00155 0.13 -0.4 29,023 - AO356_00155 0.13 +0.0 29,023 - AO356_00155 0.13 +0.9 29,127 + AO356_00155 0.32 -0.4 29,128 - AO356_00155 0.32 -1.0 29,128 - AO356_00155 0.32 -0.1 29,207 + AO356_00155 0.47 -2.1 29,208 - AO356_00155 0.47 +0.9 29,219 + AO356_00155 0.49 -1.6 29,236 + AO356_00155 0.52 +0.4 29,236 + AO356_00155 0.52 +0.1 29,236 + AO356_00155 0.52 -0.1 29,236 + AO356_00155 0.52 +1.0 29,236 + AO356_00155 0.52 -0.4 29,237 - AO356_00155 0.52 +0.5 29,237 - AO356_00155 0.52 -0.5 29,237 - AO356_00155 0.52 +0.3 29,286 - AO356_00155 0.61 +1.4 29,292 - AO356_00155 0.62 +1.6 29,292 - AO356_00155 0.62 -0.6 29,292 - AO356_00155 0.62 -1.2 29,346 - AO356_00155 0.72 +0.2 29,357 + AO356_00155 0.74 -1.4 29,358 - AO356_00155 0.74 +1.4 29,358 - AO356_00155 0.74 +0.0 29,568 + AO356_00160 0.11 -1.0 29,568 + AO356_00160 0.11 -0.1 29,578 - AO356_00160 0.13 +0.7 29,578 - AO356_00160 0.13 +0.4 29,620 + AO356_00160 0.19 -1.4 29,738 + AO356_00160 0.36 -1.3 29,738 + AO356_00160 0.36 -0.2 29,777 - AO356_00160 0.42 +1.0 30,029 + AO356_00160 0.80 -1.0 30,187 + +0.1 30,472 + AO356_00165 0.41 +0.1 30,473 - AO356_00165 0.42 +1.6
Or see this region's nucleotide sequence