Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16535

Experiment: L-Glutamic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_16525 and AO353_16530 are separated by 17 nucleotidesAO353_16530 and AO353_16535 are separated by 76 nucleotidesAO353_16535 and AO353_16540 are separated by 153 nucleotides AO353_16525: AO353_16525 - lipid-A-disaccharide synthase, at 3,668,657 to 3,669,790 _16525 AO353_16530: AO353_16530 - ribonuclease HII, at 3,669,808 to 3,670,428 _16530 AO353_16535: AO353_16535 - DNA polymerase III subunit alpha, at 3,670,505 to 3,674,026 _16535 AO353_16540: AO353_16540 - acetyl-CoA carboxylase subunit alpha, at 3,674,180 to 3,675,127 _16540 Position (kb) 3670 3671 3672 3673 3674 3675Strain fitness (log2 ratio) -2 -1 0 1 2at 3669.797 kb on + strandat 3669.797 kb on + strandat 3669.797 kb on + strandat 3669.797 kb on + strandat 3669.798 kb on - strandat 3669.798 kb on - strandat 3669.798 kb on - strandat 3669.798 kb on - strandat 3669.798 kb on - strandat 3669.798 kb on - strandat 3669.823 kb on - strandat 3669.989 kb on - strand, within AO353_16530at 3670.062 kb on + strand, within AO353_16530at 3670.063 kb on - strand, within AO353_16530at 3670.396 kb on + strandat 3670.396 kb on + strandat 3670.396 kb on + strandat 3670.396 kb on + strandat 3670.397 kb on - strandat 3670.397 kb on - strandat 3670.397 kb on - strandat 3670.397 kb on - strandat 3670.397 kb on - strandat 3670.426 kb on + strandat 3670.426 kb on + strandat 3670.426 kb on + strandat 3670.426 kb on + strandat 3670.426 kb on + strandat 3670.426 kb on + strandat 3670.426 kb on + strandat 3670.427 kb on - strandat 3670.427 kb on - strandat 3670.427 kb on - strandat 3670.427 kb on - strandat 3670.461 kb on - strandat 3674.045 kb on + strandat 3674.083 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
remove
3,669,797 + -0.7
3,669,797 + -0.4
3,669,797 + +0.7
3,669,797 + -0.0
3,669,798 - +0.2
3,669,798 - +0.1
3,669,798 - +0.7
3,669,798 - -0.5
3,669,798 - -2.0
3,669,798 - -0.8
3,669,823 - +0.1
3,669,989 - AO353_16530 0.29 +1.2
3,670,062 + AO353_16530 0.41 +1.4
3,670,063 - AO353_16530 0.41 +1.1
3,670,396 + +0.9
3,670,396 + -0.8
3,670,396 + +0.7
3,670,396 + -0.1
3,670,397 - +0.8
3,670,397 - +0.2
3,670,397 - -0.5
3,670,397 - -1.1
3,670,397 - -1.7
3,670,426 + -0.2
3,670,426 + -0.7
3,670,426 + -1.1
3,670,426 + -0.4
3,670,426 + +2.1
3,670,426 + +0.7
3,670,426 + -0.7
3,670,427 - +1.2
3,670,427 - -0.5
3,670,427 - +0.3
3,670,427 - +0.1
3,670,461 - -0.5
3,674,045 + +0.2
3,674,083 + -1.9

Or see this region's nucleotide sequence