Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05895

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05890 and AO353_05895 are separated by 1 nucleotidesAO353_05895 and AO353_05900 are separated by 16 nucleotides AO353_05890: AO353_05890 - D-aminoacylase, at 1,308,992 to 1,310,449 _05890 AO353_05895: AO353_05895 - RpiR family transcriptional regulator, at 1,310,451 to 1,311,311 _05895 AO353_05900: AO353_05900 - permease DsdX, at 1,311,328 to 1,312,677 _05900 Position (kb) 1310 1311 1312Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1309.608 kb on + strand, within AO353_05890at 1309.609 kb on - strand, within AO353_05890at 1309.609 kb on - strand, within AO353_05890at 1309.615 kb on - strand, within AO353_05890at 1309.812 kb on + strand, within AO353_05890at 1309.812 kb on + strand, within AO353_05890at 1309.812 kb on + strand, within AO353_05890at 1309.812 kb on + strand, within AO353_05890at 1309.812 kb on + strand, within AO353_05890at 1309.813 kb on - strand, within AO353_05890at 1309.813 kb on - strand, within AO353_05890at 1309.813 kb on - strand, within AO353_05890at 1309.813 kb on - strand, within AO353_05890at 1309.864 kb on + strand, within AO353_05890at 1309.864 kb on + strand, within AO353_05890at 1309.864 kb on + strand, within AO353_05890at 1309.865 kb on - strand, within AO353_05890at 1309.865 kb on - strand, within AO353_05890at 1309.887 kb on + strand, within AO353_05890at 1310.094 kb on + strand, within AO353_05890at 1310.113 kb on + strand, within AO353_05890at 1310.113 kb on + strand, within AO353_05890at 1310.263 kb on + strand, within AO353_05890at 1310.263 kb on + strand, within AO353_05890at 1310.263 kb on + strand, within AO353_05890at 1310.264 kb on - strand, within AO353_05890at 1310.264 kb on - strand, within AO353_05890at 1310.264 kb on - strand, within AO353_05890at 1310.264 kb on - strand, within AO353_05890at 1310.264 kb on - strand, within AO353_05890at 1310.264 kb on - strand, within AO353_05890at 1310.264 kb on - strand, within AO353_05890at 1310.264 kb on - strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.267 kb on + strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.268 kb on - strand, within AO353_05890at 1310.442 kb on + strandat 1310.443 kb on - strandat 1310.443 kb on - strandat 1310.488 kb on + strandat 1310.614 kb on + strand, within AO353_05895at 1310.614 kb on + strand, within AO353_05895at 1310.614 kb on + strand, within AO353_05895at 1310.615 kb on - strand, within AO353_05895at 1310.615 kb on - strand, within AO353_05895at 1310.615 kb on - strand, within AO353_05895at 1310.713 kb on + strand, within AO353_05895at 1310.713 kb on + strand, within AO353_05895at 1310.713 kb on + strand, within AO353_05895at 1310.889 kb on - strand, within AO353_05895at 1311.225 kb on + strand, within AO353_05895at 1311.225 kb on + strand, within AO353_05895at 1311.225 kb on + strand, within AO353_05895at 1311.225 kb on + strand, within AO353_05895at 1311.226 kb on - strandat 1311.226 kb on - strandat 1311.338 kb on + strandat 1311.338 kb on + strandat 1311.338 kb on + strandat 1311.338 kb on + strandat 1311.338 kb on + strandat 1311.338 kb on + strandat 1311.338 kb on + strandat 1311.338 kb on + strandat 1311.338 kb on + strandat 1311.338 kb on + strandat 1311.338 kb on + strandat 1311.338 kb on + strandat 1311.339 kb on - strandat 1311.339 kb on - strandat 1311.339 kb on - strandat 1311.339 kb on - strandat 1311.426 kb on + strandat 1311.426 kb on + strandat 1311.426 kb on + strandat 1311.426 kb on + strandat 1311.426 kb on + strandat 1311.427 kb on - strandat 1311.427 kb on - strandat 1311.427 kb on - strandat 1311.434 kb on + strandat 1311.435 kb on - strandat 1311.481 kb on - strand, within AO353_05900at 1311.742 kb on - strand, within AO353_05900at 1311.742 kb on - strand, within AO353_05900at 1312.080 kb on - strand, within AO353_05900at 1312.080 kb on - strand, within AO353_05900at 1312.080 kb on - strand, within AO353_05900at 1312.080 kb on - strand, within AO353_05900at 1312.127 kb on + strand, within AO353_05900at 1312.157 kb on + strand, within AO353_05900at 1312.157 kb on + strand, within AO353_05900at 1312.158 kb on - strand, within AO353_05900at 1312.158 kb on - strand, within AO353_05900at 1312.262 kb on - strand, within AO353_05900

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,309,608 + AO353_05890 0.42 +0.3
1,309,609 - AO353_05890 0.42 +0.1
1,309,609 - AO353_05890 0.42 +1.5
1,309,615 - AO353_05890 0.43 -0.1
1,309,812 + AO353_05890 0.56 +0.3
1,309,812 + AO353_05890 0.56 +0.8
1,309,812 + AO353_05890 0.56 -1.0
1,309,812 + AO353_05890 0.56 -0.0
1,309,812 + AO353_05890 0.56 +1.0
1,309,813 - AO353_05890 0.56 -0.1
1,309,813 - AO353_05890 0.56 -0.5
1,309,813 - AO353_05890 0.56 -1.4
1,309,813 - AO353_05890 0.56 -1.0
1,309,864 + AO353_05890 0.60 -0.8
1,309,864 + AO353_05890 0.60 -1.5
1,309,864 + AO353_05890 0.60 -0.1
1,309,865 - AO353_05890 0.60 -0.2
1,309,865 - AO353_05890 0.60 +0.5
1,309,887 + AO353_05890 0.61 -0.1
1,310,094 + AO353_05890 0.76 -0.3
1,310,113 + AO353_05890 0.77 -0.9
1,310,113 + AO353_05890 0.77 -1.0
1,310,263 + AO353_05890 0.87 +0.4
1,310,263 + AO353_05890 0.87 +0.3
1,310,263 + AO353_05890 0.87 -0.3
1,310,264 - AO353_05890 0.87 -0.5
1,310,264 - AO353_05890 0.87 -0.2
1,310,264 - AO353_05890 0.87 +0.1
1,310,264 - AO353_05890 0.87 -0.0
1,310,264 - AO353_05890 0.87 +0.4
1,310,264 - AO353_05890 0.87 +0.0
1,310,264 - AO353_05890 0.87 +0.2
1,310,264 - AO353_05890 0.87 -1.1
1,310,267 + AO353_05890 0.87 -0.1
1,310,267 + AO353_05890 0.87 +0.5
1,310,267 + AO353_05890 0.87 -0.4
1,310,267 + AO353_05890 0.87 -0.1
1,310,267 + AO353_05890 0.87 -1.2
1,310,267 + AO353_05890 0.87 +0.7
1,310,267 + AO353_05890 0.87 +0.7
1,310,267 + AO353_05890 0.87 +0.4
1,310,267 + AO353_05890 0.87 +0.0
1,310,267 + AO353_05890 0.87 +0.5
1,310,267 + AO353_05890 0.87 -0.1
1,310,267 + AO353_05890 0.87 +0.8
1,310,267 + AO353_05890 0.87 -1.8
1,310,267 + AO353_05890 0.87 -0.0
1,310,267 + AO353_05890 0.87 -0.1
1,310,267 + AO353_05890 0.87 +0.2
1,310,267 + AO353_05890 0.87 -0.8
1,310,267 + AO353_05890 0.87 -0.4
1,310,267 + AO353_05890 0.87 +0.2
1,310,267 + AO353_05890 0.87 -0.7
1,310,267 + AO353_05890 0.87 -0.8
1,310,268 - AO353_05890 0.88 -0.4
1,310,268 - AO353_05890 0.88 +0.6
1,310,268 - AO353_05890 0.88 -0.7
1,310,268 - AO353_05890 0.88 +1.1
1,310,268 - AO353_05890 0.88 +0.8
1,310,268 - AO353_05890 0.88 -1.5
1,310,268 - AO353_05890 0.88 +1.0
1,310,268 - AO353_05890 0.88 +0.3
1,310,268 - AO353_05890 0.88 -0.1
1,310,268 - AO353_05890 0.88 +0.1
1,310,268 - AO353_05890 0.88 -1.7
1,310,268 - AO353_05890 0.88 +0.2
1,310,268 - AO353_05890 0.88 +0.4
1,310,268 - AO353_05890 0.88 +0.7
1,310,268 - AO353_05890 0.88 -0.5
1,310,268 - AO353_05890 0.88 +0.5
1,310,268 - AO353_05890 0.88 +1.1
1,310,268 - AO353_05890 0.88 -0.1
1,310,268 - AO353_05890 0.88 -0.4
1,310,442 + +0.2
1,310,443 - +0.1
1,310,443 - +0.5
1,310,488 + -0.4
1,310,614 + AO353_05895 0.19 +0.9
1,310,614 + AO353_05895 0.19 -0.8
1,310,614 + AO353_05895 0.19 +1.0
1,310,615 - AO353_05895 0.19 +0.6
1,310,615 - AO353_05895 0.19 +0.8
1,310,615 - AO353_05895 0.19 -0.7
1,310,713 + AO353_05895 0.30 +1.0
1,310,713 + AO353_05895 0.30 -0.8
1,310,713 + AO353_05895 0.30 +0.6
1,310,889 - AO353_05895 0.51 +0.8
1,311,225 + AO353_05895 0.90 +0.6
1,311,225 + AO353_05895 0.90 +0.1
1,311,225 + AO353_05895 0.90 +2.8
1,311,225 + AO353_05895 0.90 +1.4
1,311,226 - +0.3
1,311,226 - +0.8
1,311,338 + +0.1
1,311,338 + -0.0
1,311,338 + -0.8
1,311,338 + +0.9
1,311,338 + +0.4
1,311,338 + +0.3
1,311,338 + -0.4
1,311,338 + -1.7
1,311,338 + -0.5
1,311,338 + +0.3
1,311,338 + +0.4
1,311,338 + +0.7
1,311,339 - -0.9
1,311,339 - -1.2
1,311,339 - -1.3
1,311,339 - -0.8
1,311,426 + +0.4
1,311,426 + +1.4
1,311,426 + -0.2
1,311,426 + +0.2
1,311,426 + -0.3
1,311,427 - +0.2
1,311,427 - +0.0
1,311,427 - +0.5
1,311,434 + +0.1
1,311,435 - +0.5
1,311,481 - AO353_05900 0.11 -0.0
1,311,742 - AO353_05900 0.31 +0.3
1,311,742 - AO353_05900 0.31 -1.5
1,312,080 - AO353_05900 0.56 +0.2
1,312,080 - AO353_05900 0.56 +0.3
1,312,080 - AO353_05900 0.56 -0.7
1,312,080 - AO353_05900 0.56 +0.3
1,312,127 + AO353_05900 0.59 +0.5
1,312,157 + AO353_05900 0.61 -1.0
1,312,157 + AO353_05900 0.61 +0.3
1,312,158 - AO353_05900 0.61 +0.4
1,312,158 - AO353_05900 0.61 +2.1
1,312,262 - AO353_05900 0.69 -1.4

Or see this region's nucleotide sequence