Experiment: Bile salts 0.0125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_761 and Pf6N2E2_762 are separated by 183 nucleotides Pf6N2E2_762 and Pf6N2E2_763 are separated by 341 nucleotides Pf6N2E2_763 and Pf6N2E2_764 are separated by 68 nucleotides
Pf6N2E2_761 - Hemolysin-type calcium-binding region, at 872,037 to 873,326
_761
Pf6N2E2_762 - FIG00960186: hypothetical protein, at 873,510 to 873,776
_762
Pf6N2E2_763 - Sigma-54 dependent transcriptional regulator, at 874,118 to 875,443
_763
Pf6N2E2_764 - Fap amyloid fiber secretin, at 875,512 to 876,747
_764
Position (kb) 874
875
876 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 873.212 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.219 kb on - strand at 873.219 kb on - strand at 873.219 kb on - strand at 873.452 kb on - strand at 873.452 kb on - strand at 873.463 kb on + strand at 873.463 kb on + strand at 873.464 kb on - strand at 873.464 kb on - strand at 873.464 kb on - strand at 873.539 kb on + strand, within Pf6N2E2_762 at 873.539 kb on + strand, within Pf6N2E2_762 at 873.539 kb on + strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.541 kb on + strand, within Pf6N2E2_762 at 873.542 kb on - strand, within Pf6N2E2_762 at 873.542 kb on - strand, within Pf6N2E2_762 at 873.606 kb on - strand, within Pf6N2E2_762 at 873.608 kb on - strand, within Pf6N2E2_762 at 873.608 kb on - strand, within Pf6N2E2_762 at 873.672 kb on - strand, within Pf6N2E2_762 at 873.672 kb on - strand, within Pf6N2E2_762 at 873.789 kb on + strand at 873.790 kb on - strand at 873.844 kb on - strand at 873.849 kb on + strand at 873.849 kb on + strand at 873.849 kb on + strand at 873.849 kb on + strand at 873.849 kb on + strand at 873.849 kb on + strand at 873.849 kb on + strand at 873.850 kb on - strand at 873.850 kb on - strand at 873.850 kb on - strand at 873.850 kb on - strand at 873.850 kb on - strand at 873.850 kb on - strand at 873.884 kb on + strand at 873.885 kb on - strand at 873.885 kb on - strand at 873.885 kb on - strand at 873.885 kb on - strand at 873.967 kb on - strand at 873.987 kb on - strand at 874.022 kb on + strand at 874.023 kb on - strand at 874.023 kb on - strand at 874.132 kb on + strand at 874.420 kb on + strand, within Pf6N2E2_763 at 874.421 kb on - strand, within Pf6N2E2_763 at 874.854 kb on + strand, within Pf6N2E2_763 at 874.855 kb on - strand, within Pf6N2E2_763 at 875.003 kb on + strand, within Pf6N2E2_763 at 875.003 kb on + strand, within Pf6N2E2_763 at 875.004 kb on - strand, within Pf6N2E2_763 at 875.006 kb on + strand, within Pf6N2E2_763 at 875.096 kb on + strand, within Pf6N2E2_763 at 875.306 kb on + strand, within Pf6N2E2_763 at 875.412 kb on - strand at 875.412 kb on - strand at 875.483 kb on + strand at 875.484 kb on - strand at 875.498 kb on + strand at 875.498 kb on + strand at 875.499 kb on - strand at 875.499 kb on - strand at 875.513 kb on + strand at 875.513 kb on + strand at 875.513 kb on + strand at 875.513 kb on + strand at 875.514 kb on - strand at 875.514 kb on - strand at 875.514 kb on - strand at 875.514 kb on - strand at 875.514 kb on - strand at 875.519 kb on + strand at 875.519 kb on + strand at 875.519 kb on + strand at 875.519 kb on + strand at 875.519 kb on + strand at 875.520 kb on - strand at 875.520 kb on - strand at 875.520 kb on - strand at 875.520 kb on - strand at 875.636 kb on + strand, within Pf6N2E2_764 at 875.637 kb on - strand, within Pf6N2E2_764 at 875.862 kb on + strand, within Pf6N2E2_764 at 875.862 kb on + strand at 875.862 kb on + strand, within Pf6N2E2_764 at 875.862 kb on + strand, within Pf6N2E2_764 at 875.862 kb on + strand, within Pf6N2E2_764 at 875.863 kb on - strand, within Pf6N2E2_764 at 875.870 kb on + strand, within Pf6N2E2_764 at 876.098 kb on + strand, within Pf6N2E2_764 at 876.098 kb on + strand, within Pf6N2E2_764 at 876.197 kb on + strand, within Pf6N2E2_764 at 876.197 kb on + strand, within Pf6N2E2_764 at 876.197 kb on + strand, within Pf6N2E2_764 at 876.197 kb on + strand, within Pf6N2E2_764 at 876.197 kb on + strand, within Pf6N2E2_764 at 876.198 kb on - strand, within Pf6N2E2_764 at 876.198 kb on - strand, within Pf6N2E2_764 at 876.258 kb on + strand, within Pf6N2E2_764 at 876.258 kb on + strand, within Pf6N2E2_764 at 876.258 kb on + strand, within Pf6N2E2_764 at 876.258 kb on + strand, within Pf6N2E2_764 at 876.259 kb on - strand, within Pf6N2E2_764 at 876.259 kb on - strand, within Pf6N2E2_764 at 876.386 kb on + strand, within Pf6N2E2_764
Per-strain Table
Position Strand Gene LocusTag Fraction Bile salts 0.0125 M remove 873,212 + -1.8 873,218 + +1.5 873,218 + -1.2 873,218 + -0.4 873,218 + -2.5 873,218 + -2.2 873,218 + -2.3 873,218 + +0.3 873,218 + -1.7 873,218 + -2.4 873,219 - -1.3 873,219 - -2.2 873,219 - -1.7 873,452 - -0.7 873,452 - +0.4 873,463 + +2.9 873,463 + -0.3 873,464 - -1.9 873,464 - -0.6 873,464 - -2.0 873,539 + Pf6N2E2_762 0.11 -1.9 873,539 + Pf6N2E2_762 0.11 +1.0 873,539 + Pf6N2E2_762 0.11 +2.0 873,540 - Pf6N2E2_762 0.11 -0.0 873,540 - Pf6N2E2_762 0.11 -1.3 873,540 - Pf6N2E2_762 0.11 +1.7 873,540 - Pf6N2E2_762 0.11 -1.0 873,540 - Pf6N2E2_762 0.11 +1.7 873,540 - Pf6N2E2_762 0.11 -2.7 873,540 - Pf6N2E2_762 0.11 +0.4 873,540 - Pf6N2E2_762 0.11 +1.0 873,540 - Pf6N2E2_762 0.11 +0.2 873,540 - Pf6N2E2_762 0.11 +0.1 873,540 - Pf6N2E2_762 0.11 -1.8 873,541 + Pf6N2E2_762 0.12 -2.3 873,542 - Pf6N2E2_762 0.12 -3.0 873,542 - Pf6N2E2_762 0.12 -2.3 873,606 - Pf6N2E2_762 0.36 +1.1 873,608 - Pf6N2E2_762 0.37 -0.3 873,608 - Pf6N2E2_762 0.37 +0.2 873,672 - Pf6N2E2_762 0.61 +1.7 873,672 - Pf6N2E2_762 0.61 +0.3 873,789 + +0.7 873,790 - -2.3 873,844 - +1.5 873,849 + -2.0 873,849 + -0.3 873,849 + -0.3 873,849 + -2.5 873,849 + +1.0 873,849 + +1.3 873,849 + +0.7 873,850 - -1.8 873,850 - +1.7 873,850 - +2.0 873,850 - +0.5 873,850 - +2.0 873,850 - -2.4 873,884 + -2.2 873,885 - -1.7 873,885 - +1.9 873,885 - +1.8 873,885 - +0.5 873,967 - -0.7 873,987 - +0.8 874,022 + -0.5 874,023 - +2.0 874,023 - +1.0 874,132 + +1.5 874,420 + Pf6N2E2_763 0.23 -0.5 874,421 - Pf6N2E2_763 0.23 -0.3 874,854 + Pf6N2E2_763 0.56 +1.2 874,855 - Pf6N2E2_763 0.56 +0.1 875,003 + Pf6N2E2_763 0.67 -2.6 875,003 + Pf6N2E2_763 0.67 +0.1 875,004 - Pf6N2E2_763 0.67 -2.3 875,006 + Pf6N2E2_763 0.67 -1.2 875,096 + Pf6N2E2_763 0.74 -1.8 875,306 + Pf6N2E2_763 0.90 -2.5 875,412 - +0.6 875,412 - +1.0 875,483 + -1.2 875,484 - -0.2 875,498 + +2.3 875,498 + -3.3 875,499 - +1.0 875,499 - -2.0 875,513 + -0.9 875,513 + -2.3 875,513 + -1.5 875,513 + +1.4 875,514 - -1.3 875,514 - +1.9 875,514 - -1.8 875,514 - -0.7 875,514 - -0.3 875,519 + +0.5 875,519 + +0.5 875,519 + -0.0 875,519 + -0.4 875,519 + +1.5 875,520 - +0.5 875,520 - -0.2 875,520 - -1.5 875,520 - +0.5 875,636 + Pf6N2E2_764 0.10 +0.7 875,637 - Pf6N2E2_764 0.10 -0.3 875,862 + Pf6N2E2_764 0.28 -0.9 875,862 + +1.7 875,862 + Pf6N2E2_764 0.28 -0.9 875,862 + Pf6N2E2_764 0.28 +0.2 875,862 + Pf6N2E2_764 0.28 +0.1 875,863 - Pf6N2E2_764 0.28 +1.8 875,870 + Pf6N2E2_764 0.29 +0.8 876,098 + Pf6N2E2_764 0.47 +1.8 876,098 + Pf6N2E2_764 0.47 +0.8 876,197 + Pf6N2E2_764 0.55 +1.1 876,197 + Pf6N2E2_764 0.55 -0.7 876,197 + Pf6N2E2_764 0.55 +1.8 876,197 + Pf6N2E2_764 0.55 -2.3 876,197 + Pf6N2E2_764 0.55 -1.2 876,198 - Pf6N2E2_764 0.56 +1.2 876,198 - Pf6N2E2_764 0.56 +0.5 876,258 + Pf6N2E2_764 0.60 +2.2 876,258 + Pf6N2E2_764 0.60 +2.7 876,258 + Pf6N2E2_764 0.60 +1.5 876,258 + Pf6N2E2_764 0.60 -0.1 876,259 - Pf6N2E2_764 0.60 -1.3 876,259 - Pf6N2E2_764 0.60 -2.4 876,386 + Pf6N2E2_764 0.71 -2.3
Or see this region's nucleotide sequence