Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_744

Experiment: Bile salts 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_743 and Pf6N2E2_744 are separated by 141 nucleotidesPf6N2E2_744 and Pf6N2E2_745 are separated by 164 nucleotidesPf6N2E2_745 and Pf6N2E2_746 are separated by 160 nucleotidesPf6N2E2_746 and Pf6N2E2_747 are separated by 3 nucleotides Pf6N2E2_743 - Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28), at 852,719 to 854,167 _743 Pf6N2E2_744 - Trans-feruloyl-CoA synthase (EC 6.2.1.34), at 854,309 to 856,186 _744 Pf6N2E2_745 - Probable transmembrane protein, at 856,351 to 856,668 _745 Pf6N2E2_746 - FIG00958097: hypothetical protein, at 856,829 to 857,083 _746 Pf6N2E2_747 - Transcriptional regulator in custer with plant-induced nitrilase, at 857,087 to 857,986 _747 Position (kb) 854 855 856 857Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 853.548 kb on - strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 854.227 kb on + strandat 854.228 kb on - strandat 854.549 kb on + strand, within Pf6N2E2_744at 854.549 kb on + strand, within Pf6N2E2_744at 854.550 kb on - strand, within Pf6N2E2_744at 854.550 kb on - strand, within Pf6N2E2_744at 854.550 kb on - strand, within Pf6N2E2_744at 854.681 kb on + strand, within Pf6N2E2_744at 854.681 kb on + strand, within Pf6N2E2_744at 854.682 kb on - strand, within Pf6N2E2_744at 854.682 kb on - strand, within Pf6N2E2_744at 854.682 kb on - strand, within Pf6N2E2_744at 854.689 kb on + strand, within Pf6N2E2_744at 854.718 kb on - strand, within Pf6N2E2_744at 854.983 kb on + strand, within Pf6N2E2_744at 855.031 kb on + strand, within Pf6N2E2_744at 855.031 kb on + strand, within Pf6N2E2_744at 855.032 kb on - strand, within Pf6N2E2_744at 855.032 kb on - strand, within Pf6N2E2_744at 855.124 kb on + strand, within Pf6N2E2_744at 855.125 kb on - strand, within Pf6N2E2_744at 855.125 kb on - strand, within Pf6N2E2_744at 855.125 kb on - strand, within Pf6N2E2_744at 855.125 kb on - strand, within Pf6N2E2_744at 855.161 kb on + strand, within Pf6N2E2_744at 855.162 kb on - strand, within Pf6N2E2_744at 855.162 kb on - strand, within Pf6N2E2_744at 855.162 kb on - strand, within Pf6N2E2_744at 855.162 kb on - strand, within Pf6N2E2_744at 855.257 kb on + strand, within Pf6N2E2_744at 855.382 kb on + strand, within Pf6N2E2_744at 855.383 kb on - strand, within Pf6N2E2_744at 855.431 kb on - strand, within Pf6N2E2_744at 855.640 kb on - strand, within Pf6N2E2_744at 856.184 kb on + strandat 856.184 kb on + strandat 856.270 kb on + strandat 856.271 kb on - strandat 856.363 kb on + strandat 856.364 kb on - strandat 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.434 kb on - strand, within Pf6N2E2_745at 856.434 kb on - strand, within Pf6N2E2_745at 856.434 kb on - strand, within Pf6N2E2_745at 856.434 kb on - strand, within Pf6N2E2_745at 856.659 kb on + strandat 856.674 kb on + strandat 856.674 kb on + strandat 856.674 kb on + strandat 856.675 kb on - strandat 856.794 kb on + strandat 856.794 kb on + strandat 856.794 kb on + strandat 856.794 kb on + strandat 856.795 kb on - strandat 856.795 kb on - strandat 856.795 kb on - strandat 856.795 kb on - strandat 856.811 kb on - strandat 856.811 kb on - strandat 856.822 kb on - strandat 857.031 kb on - strand, within Pf6N2E2_746at 857.043 kb on + strand, within Pf6N2E2_746at 857.081 kb on + strandat 857.081 kb on + strandat 857.081 kb on + strandat 857.081 kb on + strandat 857.081 kb on + strandat 857.081 kb on + strandat 857.082 kb on - strandat 857.082 kb on - strandat 857.088 kb on + strandat 857.088 kb on + strandat 857.088 kb on + strandat 857.089 kb on - strandat 857.089 kb on - strandat 857.123 kb on + strandat 857.123 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bile salts 0.0125 M
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853,548 - Pf6N2E2_743 0.57 -1.8
853,566 + Pf6N2E2_743 0.58 -1.2
853,566 + Pf6N2E2_743 0.58 -2.2
853,566 + Pf6N2E2_743 0.58 -1.6
853,566 + Pf6N2E2_743 0.58 -0.3
853,566 + Pf6N2E2_743 0.58 +1.7
853,566 + Pf6N2E2_743 0.58 +0.7
853,567 - Pf6N2E2_743 0.59 +0.5
853,567 - Pf6N2E2_743 0.59 +0.9
853,567 - Pf6N2E2_743 0.59 -1.4
853,567 - Pf6N2E2_743 0.59 -0.2
853,567 - Pf6N2E2_743 0.59 -0.2
853,567 - Pf6N2E2_743 0.59 +1.8
854,227 + +1.4
854,228 - +2.2
854,549 + Pf6N2E2_744 0.13 -2.5
854,549 + Pf6N2E2_744 0.13 +1.7
854,550 - Pf6N2E2_744 0.13 +0.8
854,550 - Pf6N2E2_744 0.13 -0.9
854,550 - Pf6N2E2_744 0.13 +0.9
854,681 + Pf6N2E2_744 0.20 -1.9
854,681 + Pf6N2E2_744 0.20 -1.9
854,682 - Pf6N2E2_744 0.20 +1.2
854,682 - Pf6N2E2_744 0.20 -1.5
854,682 - Pf6N2E2_744 0.20 +0.7
854,689 + Pf6N2E2_744 0.20 -0.2
854,718 - Pf6N2E2_744 0.22 -1.3
854,983 + Pf6N2E2_744 0.36 -0.5
855,031 + Pf6N2E2_744 0.38 -1.8
855,031 + Pf6N2E2_744 0.38 -1.6
855,032 - Pf6N2E2_744 0.38 -0.3
855,032 - Pf6N2E2_744 0.38 +1.3
855,124 + Pf6N2E2_744 0.43 +0.7
855,125 - Pf6N2E2_744 0.43 -2.8
855,125 - Pf6N2E2_744 0.43 -1.3
855,125 - Pf6N2E2_744 0.43 +0.9
855,125 - Pf6N2E2_744 0.43 -0.9
855,161 + Pf6N2E2_744 0.45 +0.7
855,162 - Pf6N2E2_744 0.45 -2.8
855,162 - Pf6N2E2_744 0.45 +0.8
855,162 - Pf6N2E2_744 0.45 -1.5
855,162 - Pf6N2E2_744 0.45 +0.7
855,257 + Pf6N2E2_744 0.50 -1.8
855,382 + Pf6N2E2_744 0.57 +1.1
855,383 - Pf6N2E2_744 0.57 +0.7
855,431 - Pf6N2E2_744 0.60 +0.8
855,640 - Pf6N2E2_744 0.71 -0.3
856,184 + -1.3
856,184 + +0.9
856,270 + -0.9
856,271 - +0.2
856,363 + -0.9
856,364 - -1.1
856,433 + Pf6N2E2_745 0.26 -1.3
856,433 + Pf6N2E2_745 0.26 +1.8
856,433 + Pf6N2E2_745 0.26 -0.1
856,433 + Pf6N2E2_745 0.26 -3.2
856,433 + Pf6N2E2_745 0.26 -0.9
856,433 + Pf6N2E2_745 0.26 -1.6
856,433 + Pf6N2E2_745 0.26 +1.1
856,433 + Pf6N2E2_745 0.26 +1.3
856,434 - Pf6N2E2_745 0.26 +1.4
856,434 - Pf6N2E2_745 0.26 +0.9
856,434 - Pf6N2E2_745 0.26 -0.6
856,434 - Pf6N2E2_745 0.26 -1.6
856,659 + +0.4
856,674 + +0.7
856,674 + +2.0
856,674 + -0.5
856,675 - +0.5
856,794 + +1.5
856,794 + -1.1
856,794 + +1.0
856,794 + +0.2
856,795 - -0.2
856,795 - -3.2
856,795 - +0.5
856,795 - -3.5
856,811 - +0.2
856,811 - -0.9
856,822 - -2.2
857,031 - Pf6N2E2_746 0.79 +1.4
857,043 + Pf6N2E2_746 0.84 +1.9
857,081 + +1.4
857,081 + -2.4
857,081 + -0.4
857,081 + +1.0
857,081 + +0.0
857,081 + -0.5
857,082 - -0.1
857,082 - -0.5
857,088 + +0.5
857,088 + -1.2
857,088 + -3.1
857,089 - -2.2
857,089 - +0.4
857,123 + +0.1
857,123 + -1.5

Or see this region's nucleotide sequence