Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_702

Experiment: Bile salts 0.0125 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_699 and Pf6N2E2_700 overlap by 8 nucleotidesPf6N2E2_700 and Pf6N2E2_701 overlap by 4 nucleotidesPf6N2E2_701 and Pf6N2E2_702 are separated by 2 nucleotidesPf6N2E2_702 and Pf6N2E2_703 overlap by 4 nucleotidesPf6N2E2_703 and Pf6N2E2_704 are separated by 190 nucleotidesPf6N2E2_704 and Pf6N2E2_705 are separated by 24 nucleotides Pf6N2E2_699 - Heme d1 biosynthesis protein NirG, at 805,609 to 806,052 _699 Pf6N2E2_700 - Heme d1 biosynthesis protein NirL, at 806,045 to 806,557 _700 Pf6N2E2_701 - Heme d1 biosynthesis protein NirD / Heme d1 biosynthesis protein NirL, at 806,554 to 807,012 _701 Pf6N2E2_702 - Heme d1 biosynthesis protein NirF, at 807,015 to 808,193 _702 Pf6N2E2_703 - Cytochrome c55X precursor NirC, at 808,190 to 808,519 _703 Pf6N2E2_704 - Cytochrome c551/c552, at 808,710 to 809,018 _704 Pf6N2E2_705 - Cytochrome cd1 nitrite reductase (EC:1.7.2.1), at 809,043 to 810,722 _705 Position (kb) 807 808 809Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 806.223 kb on + strand, within Pf6N2E2_700at 806.223 kb on + strand, within Pf6N2E2_700at 806.223 kb on + strand, within Pf6N2E2_700at 806.223 kb on + strand, within Pf6N2E2_700at 806.223 kb on + strand, within Pf6N2E2_700at 806.223 kb on + strand, within Pf6N2E2_700at 806.224 kb on - strand, within Pf6N2E2_700at 806.257 kb on - strand, within Pf6N2E2_700at 806.708 kb on + strand, within Pf6N2E2_701at 806.708 kb on + strand, within Pf6N2E2_701at 806.709 kb on - strand, within Pf6N2E2_701at 806.726 kb on + strand, within Pf6N2E2_701at 806.726 kb on + strand, within Pf6N2E2_701at 806.727 kb on - strand, within Pf6N2E2_701at 806.727 kb on - strand, within Pf6N2E2_701at 806.727 kb on - strand, within Pf6N2E2_701at 806.727 kb on - strand, within Pf6N2E2_701at 807.451 kb on + strand, within Pf6N2E2_702at 807.452 kb on - strand, within Pf6N2E2_702at 807.568 kb on + strand, within Pf6N2E2_702at 807.568 kb on + strand, within Pf6N2E2_702at 807.568 kb on + strand, within Pf6N2E2_702at 807.568 kb on + strand, within Pf6N2E2_702at 807.568 kb on + strand, within Pf6N2E2_702at 807.568 kb on + strand, within Pf6N2E2_702at 807.568 kb on + strand, within Pf6N2E2_702at 807.568 kb on + strand, within Pf6N2E2_702at 807.568 kb on + strand, within Pf6N2E2_702at 807.568 kb on + strand, within Pf6N2E2_702at 807.569 kb on - strand, within Pf6N2E2_702at 807.569 kb on - strand, within Pf6N2E2_702at 807.569 kb on - strand, within Pf6N2E2_702at 807.569 kb on - strand, within Pf6N2E2_702at 807.569 kb on - strand, within Pf6N2E2_702at 807.572 kb on - strand, within Pf6N2E2_702at 807.572 kb on - strand, within Pf6N2E2_702at 807.601 kb on + strand, within Pf6N2E2_702at 807.601 kb on + strand, within Pf6N2E2_702at 807.601 kb on + strand, within Pf6N2E2_702at 807.601 kb on + strand, within Pf6N2E2_702at 807.601 kb on + strand, within Pf6N2E2_702at 807.602 kb on - strand, within Pf6N2E2_702at 807.602 kb on - strand, within Pf6N2E2_702at 807.814 kb on - strand, within Pf6N2E2_702at 807.835 kb on + strand, within Pf6N2E2_702at 807.970 kb on + strand, within Pf6N2E2_702at 807.970 kb on + strand, within Pf6N2E2_702at 807.970 kb on + strand, within Pf6N2E2_702at 807.970 kb on + strand, within Pf6N2E2_702at 807.970 kb on + strand, within Pf6N2E2_702at 807.971 kb on - strand, within Pf6N2E2_702at 807.971 kb on - strand, within Pf6N2E2_702at 807.971 kb on - strand, within Pf6N2E2_702at 807.971 kb on - strand, within Pf6N2E2_702at 808.377 kb on + strand, within Pf6N2E2_703at 808.377 kb on + strand, within Pf6N2E2_703at 808.377 kb on + strand, within Pf6N2E2_703at 808.377 kb on + strand, within Pf6N2E2_703at 808.377 kb on + strand, within Pf6N2E2_703at 808.377 kb on + strand, within Pf6N2E2_703at 808.378 kb on - strand, within Pf6N2E2_703at 808.378 kb on - strand, within Pf6N2E2_703at 808.534 kb on + strandat 808.534 kb on + strandat 808.535 kb on - strandat 808.711 kb on + strandat 808.712 kb on - strandat 808.712 kb on - strandat 808.712 kb on - strandat 808.715 kb on + strandat 808.716 kb on - strandat 808.716 kb on - strandat 808.805 kb on + strand, within Pf6N2E2_704at 808.806 kb on - strand, within Pf6N2E2_704at 808.806 kb on - strand, within Pf6N2E2_704at 808.901 kb on + strand, within Pf6N2E2_704at 808.902 kb on - strand, within Pf6N2E2_704at 809.010 kb on - strandat 809.047 kb on + strandat 809.047 kb on + strandat 809.047 kb on + strandat 809.047 kb on + strandat 809.047 kb on + strandat 809.048 kb on - strandat 809.048 kb on - strandat 809.068 kb on + strandat 809.068 kb on + strandat 809.068 kb on + strandat 809.068 kb on + strandat 809.068 kb on + strandat 809.068 kb on + strandat 809.068 kb on + strandat 809.069 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bile salts 0.0125 M
remove
806,223 + Pf6N2E2_700 0.35 +2.8
806,223 + Pf6N2E2_700 0.35 +1.8
806,223 + Pf6N2E2_700 0.35 +1.3
806,223 + Pf6N2E2_700 0.35 +3.3
806,223 + Pf6N2E2_700 0.35 -2.0
806,223 + Pf6N2E2_700 0.35 -1.6
806,224 - Pf6N2E2_700 0.35 -1.9
806,257 - Pf6N2E2_700 0.41 -0.5
806,708 + Pf6N2E2_701 0.34 +1.3
806,708 + Pf6N2E2_701 0.34 -3.0
806,709 - Pf6N2E2_701 0.34 +1.0
806,726 + Pf6N2E2_701 0.37 -1.5
806,726 + Pf6N2E2_701 0.37 -1.3
806,727 - Pf6N2E2_701 0.38 +2.7
806,727 - Pf6N2E2_701 0.38 -0.4
806,727 - Pf6N2E2_701 0.38 +0.2
806,727 - Pf6N2E2_701 0.38 -0.5
807,451 + Pf6N2E2_702 0.37 +0.8
807,452 - Pf6N2E2_702 0.37 +2.5
807,568 + Pf6N2E2_702 0.47 +1.5
807,568 + Pf6N2E2_702 0.47 -1.2
807,568 + Pf6N2E2_702 0.47 +0.0
807,568 + Pf6N2E2_702 0.47 -0.2
807,568 + Pf6N2E2_702 0.47 -1.8
807,568 + Pf6N2E2_702 0.47 -0.9
807,568 + Pf6N2E2_702 0.47 -1.6
807,568 + Pf6N2E2_702 0.47 -1.8
807,568 + Pf6N2E2_702 0.47 +2.1
807,568 + Pf6N2E2_702 0.47 +0.0
807,569 - Pf6N2E2_702 0.47 -1.7
807,569 - Pf6N2E2_702 0.47 -1.2
807,569 - Pf6N2E2_702 0.47 -2.0
807,569 - Pf6N2E2_702 0.47 -2.7
807,569 - Pf6N2E2_702 0.47 -1.1
807,572 - Pf6N2E2_702 0.47 -3.0
807,572 - Pf6N2E2_702 0.47 -2.2
807,601 + Pf6N2E2_702 0.50 +0.7
807,601 + Pf6N2E2_702 0.50 +1.5
807,601 + Pf6N2E2_702 0.50 -1.3
807,601 + Pf6N2E2_702 0.50 +0.2
807,601 + Pf6N2E2_702 0.50 +0.7
807,602 - Pf6N2E2_702 0.50 -1.1
807,602 - Pf6N2E2_702 0.50 -2.6
807,814 - Pf6N2E2_702 0.68 +4.4
807,835 + Pf6N2E2_702 0.70 -1.1
807,970 + Pf6N2E2_702 0.81 -0.4
807,970 + Pf6N2E2_702 0.81 +0.2
807,970 + Pf6N2E2_702 0.81 -1.3
807,970 + Pf6N2E2_702 0.81 +0.5
807,970 + Pf6N2E2_702 0.81 +1.4
807,971 - Pf6N2E2_702 0.81 -1.0
807,971 - Pf6N2E2_702 0.81 -2.4
807,971 - Pf6N2E2_702 0.81 -0.5
807,971 - Pf6N2E2_702 0.81 +1.7
808,377 + Pf6N2E2_703 0.57 -1.6
808,377 + Pf6N2E2_703 0.57 +0.3
808,377 + Pf6N2E2_703 0.57 +0.9
808,377 + Pf6N2E2_703 0.57 +1.4
808,377 + Pf6N2E2_703 0.57 -0.2
808,377 + Pf6N2E2_703 0.57 +2.4
808,378 - Pf6N2E2_703 0.57 -0.1
808,378 - Pf6N2E2_703 0.57 +0.1
808,534 + +0.6
808,534 + +2.0
808,535 - -1.1
808,711 + +0.1
808,712 - +1.4
808,712 - -2.1
808,712 - +0.2
808,715 + -1.5
808,716 - +1.4
808,716 - +0.7
808,805 + Pf6N2E2_704 0.31 -1.6
808,806 - Pf6N2E2_704 0.31 -2.1
808,806 - Pf6N2E2_704 0.31 +1.5
808,901 + Pf6N2E2_704 0.62 -1.4
808,902 - Pf6N2E2_704 0.62 +1.1
809,010 - -0.9
809,047 + -1.1
809,047 + +0.2
809,047 + -1.1
809,047 + -1.9
809,047 + -0.6
809,048 - +1.5
809,048 - -0.0
809,068 + -0.8
809,068 + +1.4
809,068 + -0.8
809,068 + +2.0
809,068 + +2.2
809,068 + -2.6
809,068 + -1.6
809,069 - +1.2

Or see this region's nucleotide sequence