Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_689

Experiment: Bile salts 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_688 and Pf6N2E2_689 are separated by 198 nucleotidesPf6N2E2_689 and Pf6N2E2_690 are separated by 259 nucleotides Pf6N2E2_688 - Transcriptional regulator, LysR family, at 794,164 to 795,087 _688 Pf6N2E2_689 - FIG00956189: hypothetical protein, at 795,286 to 795,780 _689 Pf6N2E2_690 - Transcriptional regulator, LysR family, at 796,040 to 796,936 _690 Position (kb) 795 796Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 794.374 kb on + strand, within Pf6N2E2_688at 794.374 kb on + strand, within Pf6N2E2_688at 794.375 kb on - strand, within Pf6N2E2_688at 794.375 kb on - strand, within Pf6N2E2_688at 794.485 kb on + strand, within Pf6N2E2_688at 794.485 kb on + strand, within Pf6N2E2_688at 794.485 kb on + strand, within Pf6N2E2_688at 794.485 kb on + strand, within Pf6N2E2_688at 794.486 kb on - strand, within Pf6N2E2_688at 794.486 kb on - strand, within Pf6N2E2_688at 794.486 kb on - strand, within Pf6N2E2_688at 794.486 kb on - strand, within Pf6N2E2_688at 794.692 kb on + strand, within Pf6N2E2_688at 794.693 kb on - strand, within Pf6N2E2_688at 794.822 kb on + strand, within Pf6N2E2_688at 794.839 kb on + strand, within Pf6N2E2_688at 794.839 kb on + strand, within Pf6N2E2_688at 794.839 kb on + strand, within Pf6N2E2_688at 794.839 kb on + strand, within Pf6N2E2_688at 794.839 kb on + strand, within Pf6N2E2_688at 794.840 kb on - strandat 794.840 kb on - strand, within Pf6N2E2_688at 794.840 kb on - strand, within Pf6N2E2_688at 794.840 kb on - strand, within Pf6N2E2_688at 794.908 kb on + strand, within Pf6N2E2_688at 794.909 kb on - strand, within Pf6N2E2_688at 794.951 kb on + strand, within Pf6N2E2_688at 794.952 kb on - strand, within Pf6N2E2_688at 795.001 kb on + strandat 795.017 kb on - strandat 795.017 kb on - strandat 795.116 kb on + strandat 795.216 kb on - strandat 795.427 kb on + strand, within Pf6N2E2_689at 795.427 kb on + strand, within Pf6N2E2_689at 795.548 kb on + strand, within Pf6N2E2_689at 795.548 kb on + strand, within Pf6N2E2_689at 795.740 kb on + strandat 795.740 kb on + strandat 795.740 kb on + strandat 795.741 kb on - strandat 795.741 kb on - strandat 795.741 kb on - strandat 795.755 kb on + strandat 795.755 kb on + strandat 795.755 kb on + strandat 795.756 kb on - strandat 795.756 kb on - strandat 795.756 kb on - strandat 795.756 kb on - strandat 795.820 kb on + strandat 795.821 kb on - strandat 795.821 kb on - strandat 796.023 kb on + strandat 796.353 kb on + strand, within Pf6N2E2_690at 796.353 kb on + strand, within Pf6N2E2_690at 796.353 kb on + strand, within Pf6N2E2_690at 796.354 kb on - strand, within Pf6N2E2_690at 796.354 kb on - strand, within Pf6N2E2_690at 796.354 kb on - strand, within Pf6N2E2_690at 796.437 kb on - strand, within Pf6N2E2_690at 796.437 kb on - strand, within Pf6N2E2_690at 796.545 kb on + strand, within Pf6N2E2_690at 796.546 kb on - strand, within Pf6N2E2_690at 796.546 kb on - strand, within Pf6N2E2_690at 796.627 kb on - strand, within Pf6N2E2_690

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Per-strain Table

Position Strand Gene LocusTag Fraction Bile salts 0.0125 M
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794,374 + Pf6N2E2_688 0.23 +1.4
794,374 + Pf6N2E2_688 0.23 -0.4
794,375 - Pf6N2E2_688 0.23 -2.5
794,375 - Pf6N2E2_688 0.23 -1.6
794,485 + Pf6N2E2_688 0.35 +1.7
794,485 + Pf6N2E2_688 0.35 +1.5
794,485 + Pf6N2E2_688 0.35 +0.6
794,485 + Pf6N2E2_688 0.35 -1.6
794,486 - Pf6N2E2_688 0.35 -0.8
794,486 - Pf6N2E2_688 0.35 +1.1
794,486 - Pf6N2E2_688 0.35 +1.2
794,486 - Pf6N2E2_688 0.35 +0.8
794,692 + Pf6N2E2_688 0.57 -2.8
794,693 - Pf6N2E2_688 0.57 +1.4
794,822 + Pf6N2E2_688 0.71 +2.2
794,839 + Pf6N2E2_688 0.73 +0.4
794,839 + Pf6N2E2_688 0.73 -1.3
794,839 + Pf6N2E2_688 0.73 -1.8
794,839 + Pf6N2E2_688 0.73 +1.8
794,839 + Pf6N2E2_688 0.73 +0.3
794,840 - +3.5
794,840 - Pf6N2E2_688 0.73 -0.4
794,840 - Pf6N2E2_688 0.73 +0.3
794,840 - Pf6N2E2_688 0.73 -0.5
794,908 + Pf6N2E2_688 0.81 -2.8
794,909 - Pf6N2E2_688 0.81 +1.7
794,951 + Pf6N2E2_688 0.85 +0.8
794,952 - Pf6N2E2_688 0.85 -3.1
795,001 + +0.9
795,017 - +2.3
795,017 - +0.4
795,116 + -1.9
795,216 - +0.3
795,427 + Pf6N2E2_689 0.28 +1.0
795,427 + Pf6N2E2_689 0.28 -1.9
795,548 + Pf6N2E2_689 0.53 +3.1
795,548 + Pf6N2E2_689 0.53 +1.4
795,740 + +2.3
795,740 + -0.3
795,740 + -0.7
795,741 - +1.2
795,741 - -0.9
795,741 - -0.0
795,755 + +1.7
795,755 + -2.3
795,755 + +0.7
795,756 - -0.4
795,756 - +1.7
795,756 - -2.1
795,756 - +3.7
795,820 + -1.3
795,821 - +3.3
795,821 - -0.9
796,023 + -1.0
796,353 + Pf6N2E2_690 0.35 +2.0
796,353 + Pf6N2E2_690 0.35 +0.6
796,353 + Pf6N2E2_690 0.35 +0.2
796,354 - Pf6N2E2_690 0.35 +1.4
796,354 - Pf6N2E2_690 0.35 +1.4
796,354 - Pf6N2E2_690 0.35 +0.7
796,437 - Pf6N2E2_690 0.44 +0.3
796,437 - Pf6N2E2_690 0.44 -0.0
796,545 + Pf6N2E2_690 0.56 +1.5
796,546 - Pf6N2E2_690 0.56 -1.3
796,546 - Pf6N2E2_690 0.56 -1.0
796,627 - Pf6N2E2_690 0.65 -1.8

Or see this region's nucleotide sequence