Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_574

Experiment: Bile salts 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_573 and Pf6N2E2_574 are separated by 143 nucleotidesPf6N2E2_574 and Pf6N2E2_575 are separated by 218 nucleotides Pf6N2E2_573 - Potassium uptake protein TrkH, at 647,101 to 648,555 _573 Pf6N2E2_574 - Transporter, LysE family, at 648,699 to 649,286 _574 Pf6N2E2_575 - Transcriptional regulator, AraC family, at 649,505 to 650,329 _575 Position (kb) 648 649 650Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 647.790 kb on - strand, within Pf6N2E2_573at 647.990 kb on + strand, within Pf6N2E2_573at 647.990 kb on + strand, within Pf6N2E2_573at 647.990 kb on + strand, within Pf6N2E2_573at 647.990 kb on + strand, within Pf6N2E2_573at 647.991 kb on - strand, within Pf6N2E2_573at 647.991 kb on - strand, within Pf6N2E2_573at 648.005 kb on + strand, within Pf6N2E2_573at 648.005 kb on + strand, within Pf6N2E2_573at 648.005 kb on + strand, within Pf6N2E2_573at 648.005 kb on + strand, within Pf6N2E2_573at 648.006 kb on - strand, within Pf6N2E2_573at 648.006 kb on - strand, within Pf6N2E2_573at 648.006 kb on - strand, within Pf6N2E2_573at 648.006 kb on - strand, within Pf6N2E2_573at 648.006 kb on - strand, within Pf6N2E2_573at 648.006 kb on - strand, within Pf6N2E2_573at 648.257 kb on + strand, within Pf6N2E2_573at 648.257 kb on + strand, within Pf6N2E2_573at 648.335 kb on + strand, within Pf6N2E2_573at 648.335 kb on + strand, within Pf6N2E2_573at 648.335 kb on + strand, within Pf6N2E2_573at 648.335 kb on + strand, within Pf6N2E2_573at 648.335 kb on + strand, within Pf6N2E2_573at 648.335 kb on + strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.455 kb on + strandat 648.455 kb on + strandat 648.455 kb on + strandat 648.455 kb on + strandat 648.455 kb on + strandat 648.455 kb on + strandat 648.455 kb on + strandat 648.455 kb on + strandat 648.456 kb on - strandat 648.456 kb on - strandat 648.456 kb on - strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.556 kb on - strandat 648.556 kb on - strandat 648.556 kb on - strandat 648.556 kb on - strandat 648.587 kb on - strandat 648.659 kb on + strandat 648.659 kb on + strandat 648.682 kb on + strandat 648.682 kb on + strandat 648.683 kb on - strandat 648.683 kb on - strandat 648.683 kb on - strandat 648.693 kb on + strandat 648.746 kb on + strandat 648.746 kb on + strandat 648.747 kb on - strandat 648.747 kb on - strandat 649.020 kb on + strand, within Pf6N2E2_574at 649.020 kb on + strand, within Pf6N2E2_574at 649.134 kb on + strand, within Pf6N2E2_574at 649.135 kb on - strand, within Pf6N2E2_574at 649.135 kb on - strand, within Pf6N2E2_574at 649.149 kb on + strand, within Pf6N2E2_574at 649.205 kb on + strand, within Pf6N2E2_574at 649.269 kb on + strandat 649.269 kb on + strandat 649.273 kb on + strandat 649.273 kb on + strandat 649.273 kb on + strandat 649.273 kb on + strandat 649.326 kb on + strandat 649.326 kb on + strandat 649.326 kb on + strandat 649.326 kb on + strandat 649.327 kb on - strandat 649.327 kb on - strandat 649.337 kb on + strandat 649.504 kb on - strandat 649.516 kb on - strandat 649.710 kb on + strand, within Pf6N2E2_575at 649.710 kb on + strand, within Pf6N2E2_575at 649.711 kb on - strand, within Pf6N2E2_575at 649.780 kb on + strand, within Pf6N2E2_575at 649.781 kb on - strand, within Pf6N2E2_575at 649.914 kb on - strand, within Pf6N2E2_575at 649.926 kb on + strand, within Pf6N2E2_575at 650.052 kb on + strand, within Pf6N2E2_575at 650.052 kb on + strand, within Pf6N2E2_575at 650.052 kb on + strand, within Pf6N2E2_575at 650.053 kb on - strand, within Pf6N2E2_575at 650.053 kb on - strand, within Pf6N2E2_575at 650.053 kb on - strand, within Pf6N2E2_575at 650.064 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.170 kb on - strand, within Pf6N2E2_575at 650.170 kb on - strand, within Pf6N2E2_575at 650.170 kb on - strand, within Pf6N2E2_575

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Per-strain Table

Position Strand Gene LocusTag Fraction Bile salts 0.0125 M
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647,790 - Pf6N2E2_573 0.47 -0.7
647,990 + Pf6N2E2_573 0.61 +1.8
647,990 + Pf6N2E2_573 0.61 +1.0
647,990 + Pf6N2E2_573 0.61 +2.6
647,990 + Pf6N2E2_573 0.61 -1.6
647,991 - Pf6N2E2_573 0.61 -1.5
647,991 - Pf6N2E2_573 0.61 -2.0
648,005 + Pf6N2E2_573 0.62 -1.1
648,005 + Pf6N2E2_573 0.62 +0.9
648,005 + Pf6N2E2_573 0.62 -1.7
648,005 + Pf6N2E2_573 0.62 +1.4
648,006 - Pf6N2E2_573 0.62 -2.0
648,006 - Pf6N2E2_573 0.62 +0.7
648,006 - Pf6N2E2_573 0.62 +1.0
648,006 - Pf6N2E2_573 0.62 +0.7
648,006 - Pf6N2E2_573 0.62 +0.1
648,006 - Pf6N2E2_573 0.62 -1.6
648,257 + Pf6N2E2_573 0.79 +0.1
648,257 + Pf6N2E2_573 0.79 -2.4
648,335 + Pf6N2E2_573 0.85 +0.1
648,335 + Pf6N2E2_573 0.85 +1.1
648,335 + Pf6N2E2_573 0.85 +0.9
648,335 + Pf6N2E2_573 0.85 -0.2
648,335 + Pf6N2E2_573 0.85 +0.8
648,335 + Pf6N2E2_573 0.85 -0.7
648,336 - Pf6N2E2_573 0.85 -2.3
648,336 - Pf6N2E2_573 0.85 -2.4
648,336 - Pf6N2E2_573 0.85 +1.5
648,336 - Pf6N2E2_573 0.85 -0.9
648,336 - Pf6N2E2_573 0.85 +0.1
648,336 - Pf6N2E2_573 0.85 -2.8
648,336 - Pf6N2E2_573 0.85 +1.4
648,336 - Pf6N2E2_573 0.85 -0.1
648,336 - Pf6N2E2_573 0.85 -1.0
648,336 - Pf6N2E2_573 0.85 +1.5
648,336 - Pf6N2E2_573 0.85 -1.4
648,336 - Pf6N2E2_573 0.85 +1.3
648,336 - Pf6N2E2_573 0.85 -0.1
648,336 - Pf6N2E2_573 0.85 -3.0
648,336 - Pf6N2E2_573 0.85 -0.4
648,455 + +0.4
648,455 + -1.5
648,455 + -0.9
648,455 + +2.9
648,455 + +1.2
648,455 + +0.3
648,455 + -2.1
648,455 + -0.9
648,456 - +0.5
648,456 - -1.5
648,456 - -1.3
648,555 + -0.6
648,555 + -1.4
648,555 + +1.4
648,555 + +1.1
648,555 + +1.3
648,555 + +0.8
648,555 + +1.3
648,556 - -1.2
648,556 - -1.5
648,556 - -0.2
648,556 - +0.1
648,587 - +1.7
648,659 + -3.4
648,659 + -1.3
648,682 + +2.0
648,682 + -2.5
648,683 - +0.4
648,683 - +0.0
648,683 - -2.9
648,693 + -1.5
648,746 + -1.3
648,746 + -2.7
648,747 - +0.1
648,747 - +0.5
649,020 + Pf6N2E2_574 0.55 +0.5
649,020 + Pf6N2E2_574 0.55 +0.8
649,134 + Pf6N2E2_574 0.74 +1.8
649,135 - Pf6N2E2_574 0.74 +2.7
649,135 - Pf6N2E2_574 0.74 +1.1
649,149 + Pf6N2E2_574 0.77 +1.5
649,205 + Pf6N2E2_574 0.86 -1.1
649,269 + +0.4
649,269 + +0.5
649,273 + -2.0
649,273 + -2.1
649,273 + +0.4
649,273 + -0.5
649,326 + +2.0
649,326 + +0.6
649,326 + -0.1
649,326 + -2.3
649,327 - -2.4
649,327 - +0.7
649,337 + +1.6
649,504 - +1.2
649,516 - -1.5
649,710 + Pf6N2E2_575 0.25 -0.6
649,710 + Pf6N2E2_575 0.25 +0.9
649,711 - Pf6N2E2_575 0.25 +1.7
649,780 + Pf6N2E2_575 0.33 +1.6
649,781 - Pf6N2E2_575 0.33 +1.7
649,914 - Pf6N2E2_575 0.50 -0.8
649,926 + Pf6N2E2_575 0.51 -3.1
650,052 + Pf6N2E2_575 0.66 -1.8
650,052 + Pf6N2E2_575 0.66 +2.1
650,052 + Pf6N2E2_575 0.66 -2.2
650,053 - Pf6N2E2_575 0.66 +0.2
650,053 - Pf6N2E2_575 0.66 +1.0
650,053 - Pf6N2E2_575 0.66 +0.4
650,064 + Pf6N2E2_575 0.68 -0.9
650,169 + Pf6N2E2_575 0.80 +0.1
650,169 + Pf6N2E2_575 0.80 +1.7
650,169 + Pf6N2E2_575 0.80 +1.5
650,169 + Pf6N2E2_575 0.80 +1.2
650,169 + Pf6N2E2_575 0.80 +1.4
650,170 - Pf6N2E2_575 0.81 +0.9
650,170 - Pf6N2E2_575 0.81 -0.6
650,170 - Pf6N2E2_575 0.81 +1.7

Or see this region's nucleotide sequence