Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_554

Experiment: Bile salts 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_552 and Pf6N2E2_553 are separated by 13 nucleotidesPf6N2E2_553 and Pf6N2E2_554 are separated by 197 nucleotidesPf6N2E2_554 and Pf6N2E2_555 are separated by 29 nucleotidesPf6N2E2_555 and Pf6N2E2_556 are separated by 83 nucleotidesPf6N2E2_556 and Pf6N2E2_557 are separated by 24 nucleotides Pf6N2E2_552 - Uncharacterized protein ImpF, at 624,652 to 625,095 _552 Pf6N2E2_553 - Uncharacterized protein ImpD, at 625,109 to 625,606 _553 Pf6N2E2_554 - Uncharacterized protein ImpC, at 625,804 to 627,285 _554 Pf6N2E2_555 - Uncharacterized protein ImpB, at 627,315 to 627,875 _555 Pf6N2E2_556 - hypothetical protein, at 627,959 to 628,075 _556 Pf6N2E2_557 - Uncharacterized protein homologous to Paeru. PA2364, at 628,100 to 628,549 _557 Position (kb) 625 626 627 628Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 624.917 kb on + strand, within Pf6N2E2_552at 625.110 kb on + strandat 625.296 kb on + strand, within Pf6N2E2_553at 625.297 kb on - strand, within Pf6N2E2_553at 625.297 kb on - strand, within Pf6N2E2_553at 625.297 kb on - strand, within Pf6N2E2_553at 625.389 kb on + strand, within Pf6N2E2_553at 625.518 kb on + strand, within Pf6N2E2_553at 625.518 kb on + strand, within Pf6N2E2_553at 625.519 kb on - strand, within Pf6N2E2_553at 625.633 kb on + strandat 625.633 kb on + strandat 625.633 kb on + strandat 625.633 kb on + strandat 625.633 kb on + strandat 625.634 kb on - strandat 625.634 kb on - strandat 625.634 kb on - strandat 625.634 kb on - strandat 625.634 kb on - strandat 625.634 kb on - strandat 625.654 kb on - strandat 625.654 kb on - strandat 625.767 kb on + strandat 625.767 kb on + strandat 625.767 kb on + strandat 625.768 kb on - strandat 625.775 kb on + strandat 625.776 kb on - strandat 625.783 kb on + strandat 625.783 kb on + strandat 625.783 kb on + strandat 625.783 kb on + strandat 625.783 kb on + strandat 625.784 kb on - strandat 625.784 kb on - strandat 625.791 kb on + strandat 625.791 kb on + strandat 625.814 kb on - strandat 625.902 kb on - strandat 625.902 kb on - strandat 626.003 kb on + strand, within Pf6N2E2_554at 626.027 kb on + strand, within Pf6N2E2_554at 626.027 kb on + strand, within Pf6N2E2_554at 626.028 kb on - strand, within Pf6N2E2_554at 626.035 kb on + strand, within Pf6N2E2_554at 626.035 kb on + strand, within Pf6N2E2_554at 626.035 kb on + strand, within Pf6N2E2_554at 626.035 kb on + strand, within Pf6N2E2_554at 626.035 kb on + strand, within Pf6N2E2_554at 626.036 kb on - strand, within Pf6N2E2_554at 626.036 kb on - strand, within Pf6N2E2_554at 626.036 kb on - strand, within Pf6N2E2_554at 626.036 kb on - strand, within Pf6N2E2_554at 626.036 kb on - strand, within Pf6N2E2_554at 626.036 kb on - strand, within Pf6N2E2_554at 626.090 kb on + strand, within Pf6N2E2_554at 626.120 kb on + strand, within Pf6N2E2_554at 626.171 kb on + strand, within Pf6N2E2_554at 626.171 kb on + strand, within Pf6N2E2_554at 626.172 kb on - strand, within Pf6N2E2_554at 626.172 kb on - strand, within Pf6N2E2_554at 626.172 kb on - strand, within Pf6N2E2_554at 626.172 kb on - strand, within Pf6N2E2_554at 626.344 kb on - strand, within Pf6N2E2_554at 626.344 kb on - strand, within Pf6N2E2_554at 626.408 kb on + strand, within Pf6N2E2_554at 626.408 kb on + strand, within Pf6N2E2_554at 626.408 kb on + strand, within Pf6N2E2_554at 626.409 kb on - strand, within Pf6N2E2_554at 626.409 kb on - strand, within Pf6N2E2_554at 626.409 kb on - strand, within Pf6N2E2_554at 626.409 kb on - strand, within Pf6N2E2_554at 626.409 kb on - strand, within Pf6N2E2_554at 626.409 kb on - strand, within Pf6N2E2_554at 626.468 kb on + strand, within Pf6N2E2_554at 626.469 kb on - strand, within Pf6N2E2_554at 626.469 kb on - strand, within Pf6N2E2_554at 626.469 kb on - strand, within Pf6N2E2_554at 626.469 kb on - strand, within Pf6N2E2_554at 626.469 kb on - strand, within Pf6N2E2_554at 626.504 kb on + strand, within Pf6N2E2_554at 626.504 kb on + strand, within Pf6N2E2_554at 626.505 kb on - strand, within Pf6N2E2_554at 626.505 kb on - strand, within Pf6N2E2_554at 626.505 kb on - strand, within Pf6N2E2_554at 626.505 kb on - strand, within Pf6N2E2_554at 626.582 kb on + strand, within Pf6N2E2_554at 626.798 kb on + strand, within Pf6N2E2_554at 626.799 kb on - strand, within Pf6N2E2_554at 626.806 kb on + strand, within Pf6N2E2_554at 626.843 kb on + strand, within Pf6N2E2_554at 626.844 kb on - strand, within Pf6N2E2_554at 626.844 kb on - strand, within Pf6N2E2_554at 626.855 kb on + strand, within Pf6N2E2_554at 626.855 kb on + strand, within Pf6N2E2_554at 626.855 kb on + strand, within Pf6N2E2_554at 626.856 kb on - strand, within Pf6N2E2_554at 627.173 kb on + strandat 627.291 kb on + strandat 627.291 kb on + strandat 627.379 kb on - strand, within Pf6N2E2_555at 627.814 kb on + strand, within Pf6N2E2_555at 627.814 kb on + strandat 627.814 kb on + strand, within Pf6N2E2_555at 627.814 kb on + strand, within Pf6N2E2_555at 627.815 kb on - strand, within Pf6N2E2_555at 627.815 kb on - strand, within Pf6N2E2_555at 627.864 kb on - strandat 628.023 kb on + strand, within Pf6N2E2_556at 628.036 kb on - strand, within Pf6N2E2_556

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Per-strain Table

Position Strand Gene LocusTag Fraction Bile salts 0.0125 M
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624,917 + Pf6N2E2_552 0.60 -2.2
625,110 + +2.2
625,296 + Pf6N2E2_553 0.38 +1.7
625,297 - Pf6N2E2_553 0.38 -0.4
625,297 - Pf6N2E2_553 0.38 +3.9
625,297 - Pf6N2E2_553 0.38 +3.6
625,389 + Pf6N2E2_553 0.56 +1.1
625,518 + Pf6N2E2_553 0.82 +1.5
625,518 + Pf6N2E2_553 0.82 -1.8
625,519 - Pf6N2E2_553 0.82 +0.8
625,633 + -3.3
625,633 + +0.6
625,633 + +1.3
625,633 + +0.5
625,633 + -0.3
625,634 - -1.6
625,634 - -1.5
625,634 - +1.9
625,634 - -1.1
625,634 - -1.0
625,634 - -2.2
625,654 - -1.0
625,654 - -0.8
625,767 + +0.3
625,767 + -2.9
625,767 + +0.6
625,768 - -1.3
625,775 + -2.3
625,776 - +0.3
625,783 + -2.3
625,783 + +0.8
625,783 + +1.0
625,783 + +1.2
625,783 + +0.8
625,784 - +0.1
625,784 - +0.4
625,791 + +0.5
625,791 + +0.7
625,814 - -1.3
625,902 - +0.2
625,902 - +0.6
626,003 + Pf6N2E2_554 0.13 -0.6
626,027 + Pf6N2E2_554 0.15 -1.4
626,027 + Pf6N2E2_554 0.15 +1.2
626,028 - Pf6N2E2_554 0.15 -0.5
626,035 + Pf6N2E2_554 0.16 +0.7
626,035 + Pf6N2E2_554 0.16 -2.4
626,035 + Pf6N2E2_554 0.16 -0.9
626,035 + Pf6N2E2_554 0.16 -0.8
626,035 + Pf6N2E2_554 0.16 -1.2
626,036 - Pf6N2E2_554 0.16 +1.6
626,036 - Pf6N2E2_554 0.16 -0.4
626,036 - Pf6N2E2_554 0.16 -0.1
626,036 - Pf6N2E2_554 0.16 +1.5
626,036 - Pf6N2E2_554 0.16 +1.3
626,036 - Pf6N2E2_554 0.16 -0.4
626,090 + Pf6N2E2_554 0.19 -2.9
626,120 + Pf6N2E2_554 0.21 -0.2
626,171 + Pf6N2E2_554 0.25 +0.0
626,171 + Pf6N2E2_554 0.25 -0.0
626,172 - Pf6N2E2_554 0.25 +1.9
626,172 - Pf6N2E2_554 0.25 -1.6
626,172 - Pf6N2E2_554 0.25 +0.8
626,172 - Pf6N2E2_554 0.25 -2.6
626,344 - Pf6N2E2_554 0.36 -0.9
626,344 - Pf6N2E2_554 0.36 -1.9
626,408 + Pf6N2E2_554 0.41 -0.3
626,408 + Pf6N2E2_554 0.41 -1.1
626,408 + Pf6N2E2_554 0.41 +0.6
626,409 - Pf6N2E2_554 0.41 +1.5
626,409 - Pf6N2E2_554 0.41 -0.7
626,409 - Pf6N2E2_554 0.41 +1.7
626,409 - Pf6N2E2_554 0.41 -1.5
626,409 - Pf6N2E2_554 0.41 -0.7
626,409 - Pf6N2E2_554 0.41 -2.0
626,468 + Pf6N2E2_554 0.45 +1.7
626,469 - Pf6N2E2_554 0.45 +0.1
626,469 - Pf6N2E2_554 0.45 -1.3
626,469 - Pf6N2E2_554 0.45 -0.5
626,469 - Pf6N2E2_554 0.45 +1.1
626,469 - Pf6N2E2_554 0.45 +0.9
626,504 + Pf6N2E2_554 0.47 +1.1
626,504 + Pf6N2E2_554 0.47 +1.4
626,505 - Pf6N2E2_554 0.47 -2.2
626,505 - Pf6N2E2_554 0.47 +2.5
626,505 - Pf6N2E2_554 0.47 +0.4
626,505 - Pf6N2E2_554 0.47 +0.4
626,582 + Pf6N2E2_554 0.52 -2.2
626,798 + Pf6N2E2_554 0.67 +0.2
626,799 - Pf6N2E2_554 0.67 -3.1
626,806 + Pf6N2E2_554 0.68 -2.0
626,843 + Pf6N2E2_554 0.70 -1.7
626,844 - Pf6N2E2_554 0.70 -2.0
626,844 - Pf6N2E2_554 0.70 -2.5
626,855 + Pf6N2E2_554 0.71 -0.9
626,855 + Pf6N2E2_554 0.71 -0.8
626,855 + Pf6N2E2_554 0.71 +0.8
626,856 - Pf6N2E2_554 0.71 +0.3
627,173 + +0.4
627,291 + +0.9
627,291 + +0.1
627,379 - Pf6N2E2_555 0.11 +0.7
627,814 + Pf6N2E2_555 0.89 +1.5
627,814 + +1.7
627,814 + Pf6N2E2_555 0.89 -0.1
627,814 + Pf6N2E2_555 0.89 +0.9
627,815 - Pf6N2E2_555 0.89 -1.5
627,815 - Pf6N2E2_555 0.89 -3.0
627,864 - -0.6
628,023 + Pf6N2E2_556 0.55 +1.0
628,036 - Pf6N2E2_556 0.66 -1.8

Or see this region's nucleotide sequence