Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3682

Experiment: Bile salts 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3681 and Pf6N2E2_3682 are separated by 268 nucleotidesPf6N2E2_3682 and Pf6N2E2_3683 are separated by 408 nucleotidesPf6N2E2_3683 and Pf6N2E2_3684 are separated by 139 nucleotides Pf6N2E2_3681 - VgrG protein, at 4,289,351 to 4,291,405 _3681 Pf6N2E2_3682 - probable membrane protein YPO0899, at 4,291,674 to 4,292,168 _3682 Pf6N2E2_3683 - hypothetical protein, at 4,292,577 to 4,293,023 _3683 Pf6N2E2_3684 - Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter, at 4,293,163 to 4,294,647 _3684 Position (kb) 4291 4292 4293Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4290.720 kb on + strand, within Pf6N2E2_3681at 4290.816 kb on + strand, within Pf6N2E2_3681at 4290.816 kb on + strand, within Pf6N2E2_3681at 4290.816 kb on + strand, within Pf6N2E2_3681at 4290.817 kb on - strand, within Pf6N2E2_3681at 4290.817 kb on - strand, within Pf6N2E2_3681at 4290.819 kb on - strand, within Pf6N2E2_3681at 4290.972 kb on + strand, within Pf6N2E2_3681at 4290.972 kb on + strand, within Pf6N2E2_3681at 4290.973 kb on - strand, within Pf6N2E2_3681at 4290.973 kb on - strand, within Pf6N2E2_3681at 4290.988 kb on - strand, within Pf6N2E2_3681at 4291.110 kb on + strand, within Pf6N2E2_3681at 4291.110 kb on + strand, within Pf6N2E2_3681at 4291.111 kb on - strand, within Pf6N2E2_3681at 4291.111 kb on - strand, within Pf6N2E2_3681at 4291.111 kb on - strand, within Pf6N2E2_3681at 4291.180 kb on + strand, within Pf6N2E2_3681at 4291.181 kb on - strand, within Pf6N2E2_3681at 4291.181 kb on - strand, within Pf6N2E2_3681at 4291.182 kb on + strand, within Pf6N2E2_3681at 4291.182 kb on + strand, within Pf6N2E2_3681at 4291.182 kb on + strand, within Pf6N2E2_3681at 4291.182 kb on + strand, within Pf6N2E2_3681at 4291.182 kb on + strand, within Pf6N2E2_3681at 4291.183 kb on - strand, within Pf6N2E2_3681at 4291.196 kb on + strand, within Pf6N2E2_3681at 4291.300 kb on - strandat 4291.492 kb on - strandat 4291.495 kb on + strandat 4291.495 kb on + strandat 4291.495 kb on + strandat 4291.495 kb on + strandat 4291.495 kb on + strandat 4291.495 kb on + strandat 4291.495 kb on + strandat 4291.495 kb on + strandat 4291.495 kb on + strandat 4291.496 kb on - strandat 4291.496 kb on - strandat 4291.496 kb on - strandat 4291.496 kb on - strandat 4291.505 kb on + strandat 4291.595 kb on + strandat 4291.595 kb on + strandat 4291.595 kb on + strandat 4291.595 kb on + strandat 4291.596 kb on - strandat 4291.596 kb on - strandat 4291.596 kb on - strandat 4291.650 kb on + strandat 4291.758 kb on + strand, within Pf6N2E2_3682at 4291.759 kb on - strand, within Pf6N2E2_3682at 4291.796 kb on + strand, within Pf6N2E2_3682at 4291.797 kb on - strand, within Pf6N2E2_3682at 4292.109 kb on + strand, within Pf6N2E2_3682at 4292.109 kb on + strand, within Pf6N2E2_3682at 4292.109 kb on + strand, within Pf6N2E2_3682at 4292.109 kb on + strand, within Pf6N2E2_3682at 4292.110 kb on - strand, within Pf6N2E2_3682at 4292.110 kb on - strand, within Pf6N2E2_3682at 4292.206 kb on + strandat 4292.206 kb on + strandat 4292.206 kb on + strandat 4292.207 kb on - strandat 4292.207 kb on - strandat 4292.207 kb on - strandat 4292.207 kb on - strandat 4292.207 kb on - strandat 4292.465 kb on + strandat 4292.502 kb on - strandat 4292.530 kb on - strandat 4292.553 kb on + strandat 4292.554 kb on - strandat 4292.554 kb on - strandat 4292.554 kb on - strandat 4292.554 kb on - strandat 4292.559 kb on - strandat 4292.622 kb on + strand, within Pf6N2E2_3683at 4292.622 kb on + strand, within Pf6N2E2_3683at 4292.622 kb on + strand, within Pf6N2E2_3683at 4292.622 kb on + strand, within Pf6N2E2_3683at 4292.623 kb on - strand, within Pf6N2E2_3683at 4292.623 kb on - strand, within Pf6N2E2_3683at 4292.694 kb on + strand, within Pf6N2E2_3683at 4292.695 kb on - strand, within Pf6N2E2_3683at 4292.738 kb on + strand, within Pf6N2E2_3683at 4292.738 kb on + strand, within Pf6N2E2_3683at 4292.738 kb on + strand, within Pf6N2E2_3683at 4292.739 kb on - strand, within Pf6N2E2_3683at 4292.739 kb on - strand, within Pf6N2E2_3683at 4292.739 kb on - strand, within Pf6N2E2_3683at 4292.739 kb on - strand, within Pf6N2E2_3683at 4292.739 kb on - strand, within Pf6N2E2_3683at 4292.739 kb on - strand, within Pf6N2E2_3683at 4292.758 kb on - strand, within Pf6N2E2_3683at 4292.758 kb on - strand, within Pf6N2E2_3683at 4292.780 kb on + strand, within Pf6N2E2_3683at 4292.780 kb on + strand, within Pf6N2E2_3683at 4292.780 kb on + strand, within Pf6N2E2_3683at 4292.780 kb on + strand, within Pf6N2E2_3683at 4292.780 kb on + strand, within Pf6N2E2_3683at 4292.781 kb on - strand, within Pf6N2E2_3683at 4292.815 kb on + strand, within Pf6N2E2_3683at 4292.815 kb on + strand, within Pf6N2E2_3683at 4292.816 kb on - strand, within Pf6N2E2_3683at 4292.816 kb on - strand, within Pf6N2E2_3683at 4292.816 kb on - strand, within Pf6N2E2_3683at 4292.893 kb on + strand, within Pf6N2E2_3683at 4292.893 kb on + strand, within Pf6N2E2_3683at 4292.893 kb on + strand, within Pf6N2E2_3683at 4292.893 kb on + strand, within Pf6N2E2_3683at 4292.893 kb on + strand, within Pf6N2E2_3683at 4292.893 kb on + strand, within Pf6N2E2_3683at 4292.894 kb on - strand, within Pf6N2E2_3683at 4292.894 kb on - strand, within Pf6N2E2_3683at 4292.894 kb on - strand, within Pf6N2E2_3683at 4292.894 kb on - strand, within Pf6N2E2_3683at 4292.894 kb on - strand, within Pf6N2E2_3683at 4292.894 kb on - strand, within Pf6N2E2_3683at 4292.894 kb on - strand, within Pf6N2E2_3683at 4292.894 kb on - strand, within Pf6N2E2_3683at 4292.894 kb on - strand, within Pf6N2E2_3683at 4292.910 kb on - strand, within Pf6N2E2_3683at 4292.922 kb on + strand, within Pf6N2E2_3683at 4292.922 kb on + strand, within Pf6N2E2_3683at 4292.922 kb on + strand, within Pf6N2E2_3683at 4292.922 kb on + strand, within Pf6N2E2_3683at 4292.923 kb on - strand, within Pf6N2E2_3683at 4292.927 kb on + strand, within Pf6N2E2_3683at 4292.927 kb on + strand, within Pf6N2E2_3683at 4292.928 kb on - strand, within Pf6N2E2_3683at 4292.964 kb on + strand, within Pf6N2E2_3683at 4292.964 kb on + strand, within Pf6N2E2_3683at 4292.965 kb on - strand, within Pf6N2E2_3683at 4292.965 kb on - strand, within Pf6N2E2_3683at 4292.966 kb on + strand, within Pf6N2E2_3683at 4292.967 kb on - strand, within Pf6N2E2_3683at 4292.994 kb on + strandat 4293.049 kb on + strandat 4293.049 kb on + strandat 4293.164 kb on + strandat 4293.165 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bile salts 0.0125 M
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4,290,720 + Pf6N2E2_3681 0.67 +0.9
4,290,816 + Pf6N2E2_3681 0.71 +1.1
4,290,816 + Pf6N2E2_3681 0.71 -3.9
4,290,816 + Pf6N2E2_3681 0.71 +1.1
4,290,817 - Pf6N2E2_3681 0.71 -1.7
4,290,817 - Pf6N2E2_3681 0.71 -3.3
4,290,819 - Pf6N2E2_3681 0.71 +0.1
4,290,972 + Pf6N2E2_3681 0.79 +0.1
4,290,972 + Pf6N2E2_3681 0.79 +2.0
4,290,973 - Pf6N2E2_3681 0.79 -0.9
4,290,973 - Pf6N2E2_3681 0.79 +0.5
4,290,988 - Pf6N2E2_3681 0.80 -0.2
4,291,110 + Pf6N2E2_3681 0.86 -1.1
4,291,110 + Pf6N2E2_3681 0.86 -0.0
4,291,111 - Pf6N2E2_3681 0.86 +1.9
4,291,111 - Pf6N2E2_3681 0.86 +1.7
4,291,111 - Pf6N2E2_3681 0.86 +1.0
4,291,180 + Pf6N2E2_3681 0.89 -1.9
4,291,181 - Pf6N2E2_3681 0.89 -0.3
4,291,181 - Pf6N2E2_3681 0.89 -0.7
4,291,182 + Pf6N2E2_3681 0.89 -0.7
4,291,182 + Pf6N2E2_3681 0.89 +0.9
4,291,182 + Pf6N2E2_3681 0.89 -0.7
4,291,182 + Pf6N2E2_3681 0.89 -2.5
4,291,182 + Pf6N2E2_3681 0.89 -4.1
4,291,183 - Pf6N2E2_3681 0.89 +1.3
4,291,196 + Pf6N2E2_3681 0.90 -0.9
4,291,300 - +2.8
4,291,492 - +0.0
4,291,495 + +2.5
4,291,495 + +1.4
4,291,495 + +1.7
4,291,495 + -1.8
4,291,495 + -1.9
4,291,495 + -0.7
4,291,495 + +0.9
4,291,495 + -0.9
4,291,495 + -0.2
4,291,496 - +1.2
4,291,496 - -1.1
4,291,496 - -1.4
4,291,496 - -0.4
4,291,505 + +0.2
4,291,595 + +0.7
4,291,595 + +0.5
4,291,595 + +1.5
4,291,595 + +1.7
4,291,596 - +2.0
4,291,596 - +0.5
4,291,596 - +0.1
4,291,650 + -0.1
4,291,758 + Pf6N2E2_3682 0.17 -2.3
4,291,759 - Pf6N2E2_3682 0.17 -2.8
4,291,796 + Pf6N2E2_3682 0.25 -0.1
4,291,797 - Pf6N2E2_3682 0.25 -2.7
4,292,109 + Pf6N2E2_3682 0.88 -1.9
4,292,109 + Pf6N2E2_3682 0.88 -2.1
4,292,109 + Pf6N2E2_3682 0.88 +1.6
4,292,109 + Pf6N2E2_3682 0.88 +1.0
4,292,110 - Pf6N2E2_3682 0.88 -2.8
4,292,110 - Pf6N2E2_3682 0.88 +1.6
4,292,206 + +0.5
4,292,206 + -2.9
4,292,206 + +1.6
4,292,207 - +2.5
4,292,207 - -0.9
4,292,207 - +1.8
4,292,207 - +0.4
4,292,207 - +0.7
4,292,465 + +2.5
4,292,502 - +2.9
4,292,530 - +1.6
4,292,553 + +1.2
4,292,554 - +0.2
4,292,554 - -2.8
4,292,554 - -1.4
4,292,554 - +1.8
4,292,559 - -0.1
4,292,622 + Pf6N2E2_3683 0.10 +1.0
4,292,622 + Pf6N2E2_3683 0.10 +0.5
4,292,622 + Pf6N2E2_3683 0.10 -3.6
4,292,622 + Pf6N2E2_3683 0.10 -0.5
4,292,623 - Pf6N2E2_3683 0.10 -0.7
4,292,623 - Pf6N2E2_3683 0.10 -0.3
4,292,694 + Pf6N2E2_3683 0.26 -0.1
4,292,695 - Pf6N2E2_3683 0.26 -1.6
4,292,738 + Pf6N2E2_3683 0.36 -2.2
4,292,738 + Pf6N2E2_3683 0.36 -1.1
4,292,738 + Pf6N2E2_3683 0.36 -1.9
4,292,739 - Pf6N2E2_3683 0.36 +0.1
4,292,739 - Pf6N2E2_3683 0.36 -1.4
4,292,739 - Pf6N2E2_3683 0.36 -2.4
4,292,739 - Pf6N2E2_3683 0.36 -2.8
4,292,739 - Pf6N2E2_3683 0.36 -1.3
4,292,739 - Pf6N2E2_3683 0.36 -1.0
4,292,758 - Pf6N2E2_3683 0.40 -0.2
4,292,758 - Pf6N2E2_3683 0.40 +0.4
4,292,780 + Pf6N2E2_3683 0.45 -0.0
4,292,780 + Pf6N2E2_3683 0.45 +0.4
4,292,780 + Pf6N2E2_3683 0.45 +1.4
4,292,780 + Pf6N2E2_3683 0.45 -0.4
4,292,780 + Pf6N2E2_3683 0.45 -0.3
4,292,781 - Pf6N2E2_3683 0.46 +1.2
4,292,815 + Pf6N2E2_3683 0.53 -0.4
4,292,815 + Pf6N2E2_3683 0.53 -2.2
4,292,816 - Pf6N2E2_3683 0.53 +2.1
4,292,816 - Pf6N2E2_3683 0.53 -1.9
4,292,816 - Pf6N2E2_3683 0.53 +0.1
4,292,893 + Pf6N2E2_3683 0.71 -2.6
4,292,893 + Pf6N2E2_3683 0.71 -0.9
4,292,893 + Pf6N2E2_3683 0.71 +0.8
4,292,893 + Pf6N2E2_3683 0.71 +1.5
4,292,893 + Pf6N2E2_3683 0.71 +0.3
4,292,893 + Pf6N2E2_3683 0.71 +1.3
4,292,894 - Pf6N2E2_3683 0.71 +0.4
4,292,894 - Pf6N2E2_3683 0.71 -0.1
4,292,894 - Pf6N2E2_3683 0.71 -1.6
4,292,894 - Pf6N2E2_3683 0.71 -3.3
4,292,894 - Pf6N2E2_3683 0.71 -1.2
4,292,894 - Pf6N2E2_3683 0.71 +0.5
4,292,894 - Pf6N2E2_3683 0.71 +0.5
4,292,894 - Pf6N2E2_3683 0.71 +0.8
4,292,894 - Pf6N2E2_3683 0.71 +0.6
4,292,910 - Pf6N2E2_3683 0.74 +1.2
4,292,922 + Pf6N2E2_3683 0.77 -3.4
4,292,922 + Pf6N2E2_3683 0.77 -2.2
4,292,922 + Pf6N2E2_3683 0.77 -0.5
4,292,922 + Pf6N2E2_3683 0.77 -0.6
4,292,923 - Pf6N2E2_3683 0.77 -2.5
4,292,927 + Pf6N2E2_3683 0.78 +0.7
4,292,927 + Pf6N2E2_3683 0.78 -0.2
4,292,928 - Pf6N2E2_3683 0.79 -2.5
4,292,964 + Pf6N2E2_3683 0.87 -2.8
4,292,964 + Pf6N2E2_3683 0.87 +0.4
4,292,965 - Pf6N2E2_3683 0.87 +2.2
4,292,965 - Pf6N2E2_3683 0.87 -1.4
4,292,966 + Pf6N2E2_3683 0.87 +1.5
4,292,967 - Pf6N2E2_3683 0.87 +0.9
4,292,994 + -0.7
4,293,049 + -3.0
4,293,049 + +2.2
4,293,164 + -0.9
4,293,165 - +1.8

Or see this region's nucleotide sequence