Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3439

Experiment: Bile salts 0.0125 M

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bile salts 0.0125 M
4,006,905	+		Pf6N2E2_3437	0.82	-2.0
4,006,906	-		Pf6N2E2_3437	0.83	-3.2
4,006,906	-		Pf6N2E2_3437	0.83	+0.8
4,006,919	-		Pf6N2E2_3437	0.83	+0.1
4,006,930	-		Pf6N2E2_3437	0.83	+0.2
4,006,969	+		Pf6N2E2_3437	0.85	+1.5
4,006,969	+		Pf6N2E2_3437	0.85	+0.9
4,006,969	+		Pf6N2E2_3437	0.85	-0.1
4,006,969	+		Pf6N2E2_3437	0.85	+1.4
4,006,970	-		Pf6N2E2_3437	0.85	-2.4
4,006,970	-		Pf6N2E2_3437	0.85	-1.7
4,007,066	+		Pf6N2E2_3437	0.88	+1.1
4,007,095	+		Pf6N2E2_3437	0.89	-1.4
4,007,095	+		Pf6N2E2_3437	0.89	+0.5
4,007,150	-				-3.1
4,007,197	+				+1.1
4,007,213	-				+1.4
4,007,313	+				-1.3
4,007,322	+				+0.5
4,007,322	+				+0.1
4,007,323	-				+0.5
4,007,344	+				-1.0
4,007,344	+				+1.5
4,007,345	-				+1.2
4,007,391	+				+1.2
4,007,391	+				-2.2
4,007,392	-				-1.0
4,007,392	-				+1.3
4,007,392	-				+0.6
4,007,392	-				+0.3
4,007,392	-				+0.6
4,007,614	-		Pf6N2E2_3438	0.58	+1.7
4,007,614	-		Pf6N2E2_3438	0.58	+0.2
4,007,642	-		Pf6N2E2_3438	0.66	+1.2
4,007,642	-		Pf6N2E2_3438	0.66	+2.3
4,007,685	-		Pf6N2E2_3438	0.77	+1.4
4,007,704	+		Pf6N2E2_3438	0.82	+0.5
4,007,704	+		Pf6N2E2_3438	0.82	-0.9
4,007,704	+		Pf6N2E2_3438	0.82	+1.6
4,007,704	+		Pf6N2E2_3438	0.82	+0.0
4,007,704	+		Pf6N2E2_3438	0.82	-1.5
4,007,705	-		Pf6N2E2_3438	0.83	+0.1
4,007,709	+		Pf6N2E2_3438	0.84	+1.5
4,007,710	-		Pf6N2E2_3438	0.84	-1.7
4,007,710	-		Pf6N2E2_3438	0.84	+0.5
4,007,799	+				-1.4
4,007,799	+				+0.9
4,007,799	+				+0.5
4,007,799	+				+1.6
4,007,799	+				+0.5
4,007,799	+				+0.7
4,007,800	-				-2.4
4,007,800	-				+0.6
4,007,800	-				-0.2
4,007,800	-				-3.2
4,007,800	-				-2.9
4,007,800	-				-2.3
4,007,800	-				+1.5
4,007,800	-				-1.4
4,007,814	+				-2.0
4,007,852	+				-2.3
4,007,853	-				-1.0
4,007,860	+				-1.0
4,007,863	+				-2.6
4,007,864	-				-2.2
4,008,334	-		Pf6N2E2_3439	0.29	-0.6
4,008,355	+		Pf6N2E2_3439	0.31	+2.9
4,008,356	-		Pf6N2E2_3439	0.31	+1.3
4,008,356	-		Pf6N2E2_3439	0.31	-0.2
4,008,358	+		Pf6N2E2_3439	0.31	+1.0
4,008,358	+		Pf6N2E2_3439	0.31	-2.3
4,008,358	+		Pf6N2E2_3439	0.31	+2.0
4,008,358	+		Pf6N2E2_3439	0.31	+1.6
4,008,358	+		Pf6N2E2_3439	0.31	-0.2
4,008,359	-		Pf6N2E2_3439	0.31	-0.4
4,008,359	-		Pf6N2E2_3439	0.31	-0.7
4,008,535	+		Pf6N2E2_3439	0.43	+2.0
4,008,536	-		Pf6N2E2_3439	0.43	+2.2
4,008,647	+		Pf6N2E2_3439	0.50	+1.4
4,008,648	-		Pf6N2E2_3439	0.51	+0.5
4,008,739	+		Pf6N2E2_3439	0.57	-1.6
4,008,739	+		Pf6N2E2_3439	0.57	+1.4
4,008,739	+		Pf6N2E2_3439	0.57	+1.6
4,008,814	+		Pf6N2E2_3439	0.62	-0.3
4,008,814	+		Pf6N2E2_3439	0.62	+1.3
4,009,274	+				+0.0
4,009,369	+				+0.6
4,009,369	+				+0.1
4,009,370	-				+1.8
4,009,541	+		Pf6N2E2_3440	0.19	+1.4
4,009,541	+		Pf6N2E2_3440	0.19	+0.8
4,009,541	+		Pf6N2E2_3440	0.19	-2.8
4,009,542	-		Pf6N2E2_3440	0.19	-1.1
4,009,542	-		Pf6N2E2_3440	0.19	+0.1
4,009,641	-		Pf6N2E2_3440	0.31	-0.4
4,009,793	-		Pf6N2E2_3440	0.48	+0.9
4,009,793	-		Pf6N2E2_3440	0.48	-0.9
4,009,962	-		Pf6N2E2_3440	0.68	-1.8
4,010,152	+		Pf6N2E2_3440	0.90	-0.9
4,010,226	-				+1.2
4,010,248	+				+0.7
4,010,248	+				-0.2
4,010,249	-				+1.3
4,010,249	-				+1.6
4,010,364	+				+0.6
4,010,365	-				-1.7
4,010,372	+				+1.8
4,010,372	+				-1.2