Experiment: Bile salts 0.0125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_20 and Pf6N2E2_21 are separated by 531 nucleotides Pf6N2E2_21 and Pf6N2E2_22 are separated by 145 nucleotides
Pf6N2E2_20 - pyoverdine-specific efflux macA-like protein, at 54,451 to 55,602
_20
Pf6N2E2_21 - Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis, at 56,134 to 56,616
_21
Pf6N2E2_22 - L-ornithine 5-monooxygenase (EC 1.13.12.-), PvdA of pyoverdin biosynthesis, at 56,762 to 58,096
_22
Position (kb) 56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.422 kb on - strand, within Pf6N2E2_20 at 55.668 kb on - strand at 55.694 kb on - strand at 55.761 kb on + strand at 55.761 kb on + strand at 55.762 kb on - strand at 55.762 kb on - strand at 55.762 kb on - strand at 55.773 kb on + strand at 55.774 kb on - strand at 55.836 kb on + strand at 55.845 kb on + strand at 55.845 kb on + strand at 55.916 kb on + strand at 55.917 kb on - strand at 55.917 kb on - strand at 55.917 kb on - strand at 55.917 kb on - strand at 55.935 kb on + strand at 55.935 kb on + strand at 55.935 kb on + strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.944 kb on + strand at 55.944 kb on + strand at 55.945 kb on - strand at 55.997 kb on + strand at 55.998 kb on - strand at 56.021 kb on - strand at 56.029 kb on + strand at 56.104 kb on + strand at 56.104 kb on + strand at 56.146 kb on + strand at 56.147 kb on - strand at 56.147 kb on - strand at 56.224 kb on + strand, within Pf6N2E2_21 at 56.224 kb on + strand, within Pf6N2E2_21 at 56.225 kb on - strand, within Pf6N2E2_21 at 56.225 kb on - strand, within Pf6N2E2_21 at 56.284 kb on + strand, within Pf6N2E2_21 at 56.284 kb on + strand, within Pf6N2E2_21 at 56.328 kb on + strand, within Pf6N2E2_21 at 56.329 kb on - strand, within Pf6N2E2_21 at 56.614 kb on + strand at 56.614 kb on + strand at 56.624 kb on - strand at 57.017 kb on + strand, within Pf6N2E2_22 at 57.068 kb on + strand, within Pf6N2E2_22 at 57.095 kb on + strand, within Pf6N2E2_22 at 57.096 kb on - strand, within Pf6N2E2_22 at 57.234 kb on + strand, within Pf6N2E2_22 at 57.235 kb on - strand, within Pf6N2E2_22 at 57.235 kb on - strand, within Pf6N2E2_22 at 57.238 kb on + strand, within Pf6N2E2_22 at 57.238 kb on + strand, within Pf6N2E2_22 at 57.238 kb on + strand, within Pf6N2E2_22 at 57.238 kb on + strand, within Pf6N2E2_22 at 57.239 kb on - strand, within Pf6N2E2_22 at 57.338 kb on + strand, within Pf6N2E2_22 at 57.339 kb on - strand, within Pf6N2E2_22 at 57.614 kb on + strand, within Pf6N2E2_22 at 57.614 kb on + strand, within Pf6N2E2_22 at 57.614 kb on + strand, within Pf6N2E2_22 at 57.615 kb on - strand, within Pf6N2E2_22 at 57.615 kb on - strand, within Pf6N2E2_22 at 57.615 kb on - strand, within Pf6N2E2_22
Per-strain Table
Position Strand Gene LocusTag Fraction Bile salts 0.0125 M remove 55,422 - Pf6N2E2_20 0.84 +1.4 55,668 - +1.4 55,694 - +1.2 55,761 + +1.1 55,761 + +1.8 55,762 - -1.3 55,762 - -0.7 55,762 - +0.2 55,773 + -1.3 55,774 - -0.6 55,836 + -1.8 55,845 + +1.6 55,845 + -1.3 55,916 + +1.0 55,917 - +0.2 55,917 - +0.5 55,917 - -1.1 55,917 - +0.7 55,935 + +2.1 55,935 + -1.7 55,935 + +0.6 55,936 - -1.6 55,936 - -0.4 55,936 - +0.5 55,936 - +2.2 55,936 - -0.3 55,936 - +0.9 55,936 - -1.3 55,944 + +1.4 55,944 + -2.5 55,945 - -0.2 55,997 + +2.1 55,998 - -2.7 56,021 - +0.4 56,029 + +1.7 56,104 + +0.2 56,104 + -1.8 56,146 + -0.6 56,147 - -0.3 56,147 - +2.0 56,224 + Pf6N2E2_21 0.19 +1.7 56,224 + Pf6N2E2_21 0.19 -2.3 56,225 - Pf6N2E2_21 0.19 +0.4 56,225 - Pf6N2E2_21 0.19 +0.6 56,284 + Pf6N2E2_21 0.31 -2.5 56,284 + Pf6N2E2_21 0.31 -2.7 56,328 + Pf6N2E2_21 0.40 -2.5 56,329 - Pf6N2E2_21 0.40 -1.3 56,614 + +0.1 56,614 + +0.0 56,624 - -2.4 57,017 + Pf6N2E2_22 0.19 -2.1 57,068 + Pf6N2E2_22 0.23 -0.2 57,095 + Pf6N2E2_22 0.25 -0.7 57,096 - Pf6N2E2_22 0.25 +0.7 57,234 + Pf6N2E2_22 0.35 +0.7 57,235 - Pf6N2E2_22 0.35 -2.7 57,235 - Pf6N2E2_22 0.35 +0.2 57,238 + Pf6N2E2_22 0.36 +1.2 57,238 + Pf6N2E2_22 0.36 -2.4 57,238 + Pf6N2E2_22 0.36 -3.0 57,238 + Pf6N2E2_22 0.36 +0.7 57,239 - Pf6N2E2_22 0.36 +1.5 57,338 + Pf6N2E2_22 0.43 -1.1 57,339 - Pf6N2E2_22 0.43 +1.1 57,614 + Pf6N2E2_22 0.64 +0.2 57,614 + Pf6N2E2_22 0.64 +1.1 57,614 + Pf6N2E2_22 0.64 +0.1 57,615 - Pf6N2E2_22 0.64 -2.0 57,615 - Pf6N2E2_22 0.64 +0.5 57,615 - Pf6N2E2_22 0.64 -0.8
Or see this region's nucleotide sequence