Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1119

Experiment: Bile salts 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1118 and Pf6N2E2_1119 overlap by 4 nucleotidesPf6N2E2_1119 and Pf6N2E2_1120 are separated by 447 nucleotides Pf6N2E2_1118 - FIG054297: Transcriptional regulator, AraC family, at 1,311,735 to 1,312,772 _1118 Pf6N2E2_1119 - FIG160596: Signaling protein with membrane-bound sensor domain and GGDEF domain, at 1,312,769 to 1,313,683 _1119 Pf6N2E2_1120 - TonB-dependent receptor, in a cluster with 3-phytase, at 1,314,131 to 1,316,653 _1120 Position (kb) 1312 1313 1314Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1311.832 kb on + strandat 1311.872 kb on - strand, within Pf6N2E2_1118at 1311.878 kb on - strand, within Pf6N2E2_1118at 1311.878 kb on - strand, within Pf6N2E2_1118at 1312.028 kb on - strand, within Pf6N2E2_1118at 1312.033 kb on + strand, within Pf6N2E2_1118at 1312.033 kb on + strand, within Pf6N2E2_1118at 1312.034 kb on - strand, within Pf6N2E2_1118at 1312.034 kb on - strand, within Pf6N2E2_1118at 1312.037 kb on + strand, within Pf6N2E2_1118at 1312.038 kb on - strand, within Pf6N2E2_1118at 1312.038 kb on - strand, within Pf6N2E2_1118at 1312.038 kb on - strand, within Pf6N2E2_1118at 1312.313 kb on + strand, within Pf6N2E2_1118at 1312.313 kb on + strand, within Pf6N2E2_1118at 1312.314 kb on - strand, within Pf6N2E2_1118at 1312.314 kb on - strand, within Pf6N2E2_1118at 1312.314 kb on - strand, within Pf6N2E2_1118at 1312.326 kb on + strand, within Pf6N2E2_1118at 1312.326 kb on + strand, within Pf6N2E2_1118at 1312.375 kb on + strand, within Pf6N2E2_1118at 1312.375 kb on + strand, within Pf6N2E2_1118at 1312.375 kb on + strand, within Pf6N2E2_1118at 1312.381 kb on + strand, within Pf6N2E2_1118at 1312.381 kb on + strand, within Pf6N2E2_1118at 1312.381 kb on + strand, within Pf6N2E2_1118at 1312.382 kb on - strand, within Pf6N2E2_1118at 1312.504 kb on + strand, within Pf6N2E2_1118at 1312.629 kb on - strand, within Pf6N2E2_1118at 1312.750 kb on + strandat 1313.021 kb on + strand, within Pf6N2E2_1119at 1313.021 kb on + strand, within Pf6N2E2_1119at 1313.022 kb on - strand, within Pf6N2E2_1119at 1313.048 kb on + strand, within Pf6N2E2_1119at 1313.142 kb on - strand, within Pf6N2E2_1119at 1313.319 kb on + strand, within Pf6N2E2_1119at 1313.320 kb on - strand, within Pf6N2E2_1119at 1313.469 kb on + strand, within Pf6N2E2_1119at 1313.469 kb on + strand, within Pf6N2E2_1119at 1313.470 kb on - strand, within Pf6N2E2_1119at 1313.470 kb on - strand, within Pf6N2E2_1119at 1313.470 kb on - strand, within Pf6N2E2_1119at 1313.473 kb on + strand, within Pf6N2E2_1119at 1313.474 kb on - strand, within Pf6N2E2_1119at 1313.967 kb on + strandat 1314.134 kb on + strandat 1314.134 kb on + strandat 1314.134 kb on + strandat 1314.134 kb on + strandat 1314.134 kb on + strandat 1314.134 kb on + strandat 1314.135 kb on - strandat 1314.677 kb on + strand, within Pf6N2E2_1120

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Per-strain Table

Position Strand Gene LocusTag Fraction Bile salts 0.0125 M
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1,311,832 + -0.5
1,311,872 - Pf6N2E2_1118 0.13 +2.2
1,311,878 - Pf6N2E2_1118 0.14 -2.1
1,311,878 - Pf6N2E2_1118 0.14 +0.9
1,312,028 - Pf6N2E2_1118 0.28 -2.2
1,312,033 + Pf6N2E2_1118 0.29 -0.1
1,312,033 + Pf6N2E2_1118 0.29 +0.4
1,312,034 - Pf6N2E2_1118 0.29 +4.4
1,312,034 - Pf6N2E2_1118 0.29 +1.9
1,312,037 + Pf6N2E2_1118 0.29 -2.1
1,312,038 - Pf6N2E2_1118 0.29 +1.1
1,312,038 - Pf6N2E2_1118 0.29 -1.8
1,312,038 - Pf6N2E2_1118 0.29 -2.1
1,312,313 + Pf6N2E2_1118 0.56 -2.3
1,312,313 + Pf6N2E2_1118 0.56 -0.8
1,312,314 - Pf6N2E2_1118 0.56 -0.9
1,312,314 - Pf6N2E2_1118 0.56 -2.3
1,312,314 - Pf6N2E2_1118 0.56 +0.3
1,312,326 + Pf6N2E2_1118 0.57 +0.2
1,312,326 + Pf6N2E2_1118 0.57 +2.6
1,312,375 + Pf6N2E2_1118 0.62 +0.3
1,312,375 + Pf6N2E2_1118 0.62 -2.2
1,312,375 + Pf6N2E2_1118 0.62 -1.9
1,312,381 + Pf6N2E2_1118 0.62 -0.8
1,312,381 + Pf6N2E2_1118 0.62 -1.6
1,312,381 + Pf6N2E2_1118 0.62 -1.1
1,312,382 - Pf6N2E2_1118 0.62 -1.6
1,312,504 + Pf6N2E2_1118 0.74 +0.0
1,312,629 - Pf6N2E2_1118 0.86 +0.9
1,312,750 + +1.1
1,313,021 + Pf6N2E2_1119 0.28 -0.2
1,313,021 + Pf6N2E2_1119 0.28 -1.8
1,313,022 - Pf6N2E2_1119 0.28 +1.7
1,313,048 + Pf6N2E2_1119 0.30 +2.7
1,313,142 - Pf6N2E2_1119 0.41 +2.0
1,313,319 + Pf6N2E2_1119 0.60 -0.5
1,313,320 - Pf6N2E2_1119 0.60 +3.2
1,313,469 + Pf6N2E2_1119 0.77 +1.2
1,313,469 + Pf6N2E2_1119 0.77 +0.7
1,313,470 - Pf6N2E2_1119 0.77 +0.3
1,313,470 - Pf6N2E2_1119 0.77 +0.1
1,313,470 - Pf6N2E2_1119 0.77 -1.5
1,313,473 + Pf6N2E2_1119 0.77 +0.4
1,313,474 - Pf6N2E2_1119 0.77 +1.4
1,313,967 + -0.5
1,314,134 + -2.7
1,314,134 + -0.2
1,314,134 + +0.7
1,314,134 + +0.4
1,314,134 + -2.6
1,314,134 + +0.1
1,314,135 - +0.7
1,314,677 + Pf6N2E2_1120 0.22 +2.1

Or see this region's nucleotide sequence