Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23445 and HSERO_RS23450 overlap by 1 nucleotides HSERO_RS23450 and HSERO_RS23455 are separated by 77 nucleotides HSERO_RS23455 and HSERO_RS23460 are separated by 22 nucleotides
HSERO_RS23445: HSERO_RS23445 - 2-hydroxychromene-2-carboxylate isomerase, at 5,378,219 to 5,378,821
_RS23445
HSERO_RS23450: HSERO_RS23450 - hypothetical protein, at 5,378,821 to 5,379,231
_RS23450
HSERO_RS23455: HSERO_RS23455 - methylcrotonoyl-CoA carboxylase, at 5,379,309 to 5,380,943
_RS23455
HSERO_RS23460: HSERO_RS23460 - 3-methylcrotonyl-CoA carboxylase subunit alpha, at 5,380,966 to 5,382,981
_RS23460
Position (kb) 5379
5380
5381 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5378.389 kb on + strand, within HSERO_RS23445 at 5378.553 kb on - strand, within HSERO_RS23445 at 5379.046 kb on + strand, within HSERO_RS23450 at 5379.054 kb on - strand, within HSERO_RS23450 at 5379.641 kb on - strand, within HSERO_RS23455 at 5380.207 kb on - strand, within HSERO_RS23455 at 5380.668 kb on - strand, within HSERO_RS23455 at 5380.970 kb on - strand at 5381.140 kb on + strand at 5381.186 kb on - strand, within HSERO_RS23460 at 5381.186 kb on - strand, within HSERO_RS23460 at 5381.186 kb on - strand, within HSERO_RS23460 at 5381.237 kb on - strand, within HSERO_RS23460 at 5381.239 kb on + strand, within HSERO_RS23460 at 5381.252 kb on - strand, within HSERO_RS23460 at 5381.377 kb on + strand, within HSERO_RS23460 at 5381.377 kb on + strand, within HSERO_RS23460 at 5381.627 kb on + strand, within HSERO_RS23460 at 5381.635 kb on - strand, within HSERO_RS23460 at 5381.917 kb on + strand, within HSERO_RS23460
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 5,378,389 + HSERO_RS23445 0.28 +0.3 5,378,553 - HSERO_RS23445 0.55 +0.3 5,379,046 + HSERO_RS23450 0.55 +0.3 5,379,054 - HSERO_RS23450 0.57 +0.5 5,379,641 - HSERO_RS23455 0.20 -0.3 5,380,207 - HSERO_RS23455 0.55 +0.9 5,380,668 - HSERO_RS23455 0.83 +0.3 5,380,970 - -0.4 5,381,140 + +0.0 5,381,186 - HSERO_RS23460 0.11 -0.2 5,381,186 - HSERO_RS23460 0.11 -0.7 5,381,186 - HSERO_RS23460 0.11 -0.7 5,381,237 - HSERO_RS23460 0.13 +1.9 5,381,239 + HSERO_RS23460 0.14 +0.1 5,381,252 - HSERO_RS23460 0.14 -0.3 5,381,377 + HSERO_RS23460 0.20 +0.2 5,381,377 + HSERO_RS23460 0.20 +0.2 5,381,627 + HSERO_RS23460 0.33 -1.9 5,381,635 - HSERO_RS23460 0.33 -1.1 5,381,917 + HSERO_RS23460 0.47 -0.1
Or see this region's nucleotide sequence