Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS22065

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS22060 and HSERO_RS22065 are separated by 35 nucleotidesHSERO_RS22065 and HSERO_RS22070 are separated by 66 nucleotides HSERO_RS22060: HSERO_RS22060 - kinase, at 5,043,316 to 5,044,314 _RS22060 HSERO_RS22065: HSERO_RS22065 - EpiA, at 5,044,350 to 5,045,303 _RS22065 HSERO_RS22070: HSERO_RS22070 - CDP-4-keto-6-deoxy-D-glucose-3-dehydrase, at 5,045,370 to 5,046,542 _RS22070 Position (kb) 5044 5045 5046Strain fitness (log2 ratio) -2 -1 0 1 2at 5043.393 kb on + strandat 5043.393 kb on + strandat 5043.434 kb on - strand, within HSERO_RS22060at 5043.482 kb on - strand, within HSERO_RS22060at 5043.549 kb on - strand, within HSERO_RS22060at 5043.941 kb on + strand, within HSERO_RS22060at 5043.951 kb on + strand, within HSERO_RS22060at 5043.996 kb on + strand, within HSERO_RS22060at 5044.526 kb on - strand, within HSERO_RS22065at 5045.152 kb on - strand, within HSERO_RS22065at 5045.202 kb on - strand, within HSERO_RS22065at 5045.255 kb on - strandat 5045.352 kb on - strandat 5045.489 kb on - strand, within HSERO_RS22070at 5045.569 kb on - strand, within HSERO_RS22070at 5045.774 kb on - strand, within HSERO_RS22070at 5045.796 kb on + strand, within HSERO_RS22070at 5045.870 kb on - strand, within HSERO_RS22070at 5045.885 kb on - strand, within HSERO_RS22070at 5045.930 kb on - strand, within HSERO_RS22070at 5045.976 kb on - strand, within HSERO_RS22070

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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5,043,393 + +0.3
5,043,393 + -1.4
5,043,434 - HSERO_RS22060 0.12 +0.0
5,043,482 - HSERO_RS22060 0.17 -0.2
5,043,549 - HSERO_RS22060 0.23 +2.0
5,043,941 + HSERO_RS22060 0.63 -0.6
5,043,951 + HSERO_RS22060 0.64 -0.5
5,043,996 + HSERO_RS22060 0.68 -0.4
5,044,526 - HSERO_RS22065 0.18 +1.6
5,045,152 - HSERO_RS22065 0.84 +0.1
5,045,202 - HSERO_RS22065 0.89 +0.9
5,045,255 - +0.5
5,045,352 - -0.5
5,045,489 - HSERO_RS22070 0.10 -0.1
5,045,569 - HSERO_RS22070 0.17 -0.4
5,045,774 - HSERO_RS22070 0.34 +1.2
5,045,796 + HSERO_RS22070 0.36 +0.5
5,045,870 - HSERO_RS22070 0.43 -0.5
5,045,885 - HSERO_RS22070 0.44 +0.2
5,045,930 - HSERO_RS22070 0.48 +1.9
5,045,976 - HSERO_RS22070 0.52 -2.0

Or see this region's nucleotide sequence