Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21450

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS21445 and HSERO_RS21450 overlap by 4 nucleotidesHSERO_RS21450 and HSERO_RS21455 are separated by 35 nucleotidesHSERO_RS21455 and HSERO_RS21460 are separated by 82 nucleotides HSERO_RS21445: HSERO_RS21445 - lipid A biosynthesis acyltransferase, at 4,909,735 to 4,910,583 _RS21445 HSERO_RS21450: HSERO_RS21450 - lipid A biosynthesis acyltransferase, at 4,910,580 to 4,911,464 _RS21450 HSERO_RS21455: HSERO_RS21455 - diaminopimelate epimerase, at 4,911,500 to 4,912,363 _RS21455 HSERO_RS21460: HSERO_RS21460 - hypothetical protein, at 4,912,446 to 4,914,044 _RS21460 Position (kb) 4910 4911 4912Strain fitness (log2 ratio) -3 -2 -1 0 1at 4910.424 kb on + strand, within HSERO_RS21445at 4910.434 kb on + strand, within HSERO_RS21445at 4910.622 kb on + strandat 4910.818 kb on - strand, within HSERO_RS21450at 4910.983 kb on + strand, within HSERO_RS21450at 4911.486 kb on + strandat 4911.494 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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4,910,424 + HSERO_RS21445 0.81 -0.1
4,910,434 + HSERO_RS21445 0.82 -2.8
4,910,622 + +0.0
4,910,818 - HSERO_RS21450 0.27 +0.5
4,910,983 + HSERO_RS21450 0.46 +1.1
4,911,486 + +0.9
4,911,494 - -1.3

Or see this region's nucleotide sequence