Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20575

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS20570 and HSERO_RS20575 are separated by 1 nucleotidesHSERO_RS20575 and HSERO_RS20580 are separated by 44 nucleotides HSERO_RS20570: HSERO_RS20570 - cell division protein Fic, at 4,717,156 to 4,718,277 _RS20570 HSERO_RS20575: HSERO_RS20575 - metal-dependent hydrolase, at 4,718,279 to 4,719,040 _RS20575 HSERO_RS20580: HSERO_RS20580 - hypothetical protein, at 4,719,085 to 4,720,845 _RS20580 Position (kb) 4718 4719 4720Strain fitness (log2 ratio) -2 -1 0 1at 4717.530 kb on - strand, within HSERO_RS20570at 4717.744 kb on + strand, within HSERO_RS20570at 4717.767 kb on - strand, within HSERO_RS20570at 4718.276 kb on + strandat 4718.386 kb on - strand, within HSERO_RS20575at 4718.457 kb on - strandat 4718.531 kb on + strand, within HSERO_RS20575at 4718.634 kb on - strand, within HSERO_RS20575at 4718.665 kb on + strand, within HSERO_RS20575at 4718.723 kb on + strand, within HSERO_RS20575at 4718.764 kb on + strand, within HSERO_RS20575at 4718.812 kb on - strand, within HSERO_RS20575at 4718.885 kb on + strand, within HSERO_RS20575at 4718.890 kb on + strand, within HSERO_RS20575at 4718.907 kb on + strand, within HSERO_RS20575at 4719.062 kb on + strandat 4719.237 kb on + strandat 4719.311 kb on - strand, within HSERO_RS20580at 4719.339 kb on + strand, within HSERO_RS20580at 4719.349 kb on - strand, within HSERO_RS20580at 4719.349 kb on - strand, within HSERO_RS20580at 4720.013 kb on - strand, within HSERO_RS20580

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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4,717,530 - HSERO_RS20570 0.33 +0.4
4,717,744 + HSERO_RS20570 0.52 +0.0
4,717,767 - HSERO_RS20570 0.54 +0.2
4,718,276 + +0.4
4,718,386 - HSERO_RS20575 0.14 +1.1
4,718,457 - +1.3
4,718,531 + HSERO_RS20575 0.33 -0.0
4,718,634 - HSERO_RS20575 0.47 +0.1
4,718,665 + HSERO_RS20575 0.51 +0.8
4,718,723 + HSERO_RS20575 0.58 +1.1
4,718,764 + HSERO_RS20575 0.64 +0.3
4,718,812 - HSERO_RS20575 0.70 +0.5
4,718,885 + HSERO_RS20575 0.80 +1.0
4,718,890 + HSERO_RS20575 0.80 +1.3
4,718,907 + HSERO_RS20575 0.82 +0.6
4,719,062 + +0.8
4,719,237 + +0.3
4,719,311 - HSERO_RS20580 0.13 -2.0
4,719,339 + HSERO_RS20580 0.14 +0.2
4,719,349 - HSERO_RS20580 0.15 +0.4
4,719,349 - HSERO_RS20580 0.15 +0.5
4,720,013 - HSERO_RS20580 0.53 -0.1

Or see this region's nucleotide sequence