Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20265

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS20260 and HSERO_RS20265 are separated by 18 nucleotidesHSERO_RS20265 and HSERO_RS20270 are separated by 33 nucleotidesHSERO_RS20270 and HSERO_RS20275 are separated by 19 nucleotides HSERO_RS20260: HSERO_RS20260 - 2-alkenal reductase, at 4,647,995 to 4,649,176 _RS20260 HSERO_RS20265: HSERO_RS20265 - hypothetical protein, at 4,649,195 to 4,649,890 _RS20265 HSERO_RS20270: HSERO_RS20270 - transcription regulator protein, at 4,649,924 to 4,650,634 _RS20270 HSERO_RS20275: HSERO_RS20275 - lactate dehydrogenase, at 4,650,654 to 4,652,384 _RS20275 Position (kb) 4649 4650Strain fitness (log2 ratio) -1 0 1at 4648.517 kb on + strand, within HSERO_RS20260at 4648.622 kb on + strand, within HSERO_RS20260at 4649.269 kb on - strand, within HSERO_RS20265at 4649.757 kb on + strand, within HSERO_RS20265at 4649.896 kb on + strandat 4650.709 kb on + strandat 4650.764 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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4,648,517 + HSERO_RS20260 0.44 -0.1
4,648,622 + HSERO_RS20260 0.53 +0.2
4,649,269 - HSERO_RS20265 0.11 -1.7
4,649,757 + HSERO_RS20265 0.81 +1.3
4,649,896 + -0.0
4,650,709 + -0.1
4,650,764 + -0.2

Or see this region's nucleotide sequence