Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18965

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS18960 and HSERO_RS18965 are separated by 29 nucleotidesHSERO_RS18965 and HSERO_RS18970 are separated by 48 nucleotidesHSERO_RS18970 and HSERO_RS18975 are separated by 38 nucleotides HSERO_RS18960: HSERO_RS18960 - 4-hydroxybenzoate polyprenyltransferase, at 4,351,672 to 4,352,526 _RS18960 HSERO_RS18965: HSERO_RS18965 - thiopurine S-methyltransferase, at 4,352,556 to 4,353,215 _RS18965 HSERO_RS18970: HSERO_RS18970 - hypothetical protein, at 4,353,264 to 4,353,626 _RS18970 HSERO_RS18975: HSERO_RS18975 - hypothetical protein, at 4,353,665 to 4,353,955 _RS18975 Position (kb) 4352 4353 4354Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4352.928 kb on + strand, within HSERO_RS18965at 4352.976 kb on + strand, within HSERO_RS18965at 4353.001 kb on + strand, within HSERO_RS18965at 4353.304 kb on + strand, within HSERO_RS18970at 4353.465 kb on - strand, within HSERO_RS18970at 4353.510 kb on - strand, within HSERO_RS18970at 4353.545 kb on + strand, within HSERO_RS18970at 4353.720 kb on + strand, within HSERO_RS18975at 4353.720 kb on + strand, within HSERO_RS18975at 4353.928 kb on + strandat 4353.928 kb on + strandat 4353.936 kb on - strandat 4353.936 kb on - strandat 4354.141 kb on + strandat 4354.159 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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4,352,928 + HSERO_RS18965 0.56 -0.2
4,352,976 + HSERO_RS18965 0.64 +2.5
4,353,001 + HSERO_RS18965 0.67 +0.6
4,353,304 + HSERO_RS18970 0.11 +1.1
4,353,465 - HSERO_RS18970 0.55 +0.5
4,353,510 - HSERO_RS18970 0.68 +0.0
4,353,545 + HSERO_RS18970 0.77 -0.3
4,353,720 + HSERO_RS18975 0.19 +0.2
4,353,720 + HSERO_RS18975 0.19 +0.0
4,353,928 + -0.7
4,353,928 + +2.3
4,353,936 - -3.5
4,353,936 - -0.3
4,354,141 + +1.2
4,354,159 + +0.1

Or see this region's nucleotide sequence