Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18630

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
4,273,842	+		HSERO_RS18625	0.33	+1.1
4,274,028	+		HSERO_RS18625	0.52	+0.6
4,274,034	+		HSERO_RS18625	0.53	+0.2
4,274,302	+		HSERO_RS18625	0.81	-1.3
4,274,310	-		HSERO_RS18625	0.82	-0.2
4,274,329	-		HSERO_RS18625	0.84	+0.3
4,274,526	+				+0.3
4,274,642	+				+1.1
4,274,660	-				-0.1
4,274,660	-				+0.6
4,274,699	+				-0.7
4,274,754	+				-1.2
4,274,770	-				-1.0
4,275,062	-		HSERO_RS18630	0.68	+0.5
4,275,373	+				-3.0
4,275,431	-		HSERO_RS18635	0.12	+0.6
4,275,431	-		HSERO_RS18635	0.12	-0.1
4,275,662	-		HSERO_RS18635	0.26	-0.1
4,275,840	+		HSERO_RS18635	0.37	+0.1
4,275,845	+		HSERO_RS18635	0.37	+0.3
4,276,173	+		HSERO_RS18635	0.57	-1.8