Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16200

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,694,843	-		HSERO_RS16190	0.49	-0.2
3,694,920	-		HSERO_RS16190	0.61	-0.2
3,694,931	+		HSERO_RS16190	0.63	+0.7
3,694,962	-		HSERO_RS16190	0.68	-0.4
3,694,973	+		HSERO_RS16190	0.70	+0.9
3,695,009	-		HSERO_RS16190	0.75	+2.1
3,695,013	-		HSERO_RS16190	0.76	+0.2
3,695,070	+		HSERO_RS16190	0.85	-0.6
3,695,282	+		HSERO_RS16195	0.19	+0.1
3,695,708	-		HSERO_RS16195	0.86	-0.7
3,696,230	-		HSERO_RS16200	0.63	-0.9
3,696,315	-		HSERO_RS16200	0.76	+0.3
3,696,325	-		HSERO_RS16200	0.77	+2.2
3,696,515	-				-0.4
3,696,552	+				-0.7
3,696,552	+				+1.5
3,696,560	-				+0.9
3,696,565	-				+0.3
3,696,674	+				-0.6
3,696,822	+		HSERO_RS16205	0.35	-0.2
3,696,995	+				+1.5
3,697,084	+				-1.7
3,697,089	+				-1.4
3,697,095	+				+0.9
3,697,151	+		HSERO_RS16210	0.15	-0.1
3,697,312	-		HSERO_RS16210	0.34	-0.4
3,697,312	-		HSERO_RS16210	0.34	+0.0
3,697,312	-		HSERO_RS16210	0.34	+2.1
3,697,329	+		HSERO_RS16210	0.36	-0.3
3,697,416	+		HSERO_RS16210	0.46	+0.6