Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS15560 and HSERO_RS15565 are separated by 49 nucleotides HSERO_RS15565 and HSERO_RS15570 overlap by 1 nucleotides HSERO_RS15570 and HSERO_RS15575 are separated by 37 nucleotides HSERO_RS15575 and HSERO_RS15580 are separated by 7 nucleotides
HSERO_RS15560: HSERO_RS15560 - phosphoadenosine phosphosulfate reductase, at 3,556,375 to 3,557,106
_RS15560
HSERO_RS15565: HSERO_RS15565 - sulfate adenylyltransferase subunit 2, at 3,557,156 to 3,558,091
_RS15565
HSERO_RS15570: HSERO_RS15570 - sulfate adenylyltransferase, at 3,558,091 to 3,559,422
_RS15570
HSERO_RS15575: HSERO_RS15575 - uroporphyrin-III C-methyltransferase, at 3,559,460 to 3,560,221
_RS15575
HSERO_RS15580: HSERO_RS15580 - tRNA-binding protein, at 3,560,229 to 3,560,600
_RS15580
Position (kb) 3558
3559
3560 Strain fitness (log2 ratio) -1
0
1
2
3 at 3557.306 kb on + strand, within HSERO_RS15565 at 3557.600 kb on + strand, within HSERO_RS15565 at 3557.728 kb on + strand, within HSERO_RS15565 at 3557.865 kb on + strand, within HSERO_RS15565 at 3558.513 kb on + strand, within HSERO_RS15570 at 3558.829 kb on + strand, within HSERO_RS15570 at 3559.103 kb on - strand, within HSERO_RS15570 at 3559.195 kb on - strand, within HSERO_RS15570 at 3559.236 kb on - strand, within HSERO_RS15570 at 3559.288 kb on + strand, within HSERO_RS15570 at 3559.464 kb on - strand at 3559.581 kb on + strand, within HSERO_RS15575 at 3560.235 kb on - strand at 3560.325 kb on + strand, within HSERO_RS15580
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 3,557,306 + HSERO_RS15565 0.16 +0.3 3,557,600 + HSERO_RS15565 0.47 +0.5 3,557,728 + HSERO_RS15565 0.61 +2.8 3,557,865 + HSERO_RS15565 0.76 -0.1 3,558,513 + HSERO_RS15570 0.32 +0.4 3,558,829 + HSERO_RS15570 0.55 +0.4 3,559,103 - HSERO_RS15570 0.76 +0.6 3,559,195 - HSERO_RS15570 0.83 +1.2 3,559,236 - HSERO_RS15570 0.86 +0.5 3,559,288 + HSERO_RS15570 0.90 +0.7 3,559,464 - +0.1 3,559,581 + HSERO_RS15575 0.16 +0.0 3,560,235 - +0.1 3,560,325 + HSERO_RS15580 0.26 +1.1
Or see this region's nucleotide sequence