Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13890

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,156,642	+				-0.1
3,156,653	+				+0.4
3,156,661	-				+0.7
3,156,862	+				+1.2
3,156,927	-		HSERO_RS13885	0.11	+0.6
3,156,995	-		HSERO_RS13885	0.22	+0.6
3,157,008	-		HSERO_RS13885	0.24	+1.1
3,157,105	-		HSERO_RS13885	0.38	+2.0
3,157,112	+		HSERO_RS13885	0.39	+1.5
3,157,128	+		HSERO_RS13885	0.42	+0.8
3,157,129	-		HSERO_RS13885	0.42	+0.7
3,157,479	+				+0.9
3,157,511	-				+0.5
3,157,530	-				-2.5
3,157,538	+				+0.1
3,157,569	-				+0.4
3,157,675	+		HSERO_RS13890	0.10	+1.0
3,158,224	-				+1.5
3,158,241	+				+1.0
3,158,456	-				+0.4
3,158,515	+				+0.6
3,158,768	+		HSERO_RS13895	0.14	+0.1
3,158,979	+		HSERO_RS13895	0.27	-0.1
3,158,987	-		HSERO_RS13895	0.28	+0.2
3,158,987	-		HSERO_RS13895	0.28	-1.1
3,159,184	-		HSERO_RS13895	0.40	+0.7
3,159,197	+		HSERO_RS13895	0.41	-0.8
3,159,260	-		HSERO_RS13895	0.45	+0.9