Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13690

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,107,576	+				+0.7
3,107,589	-				-0.2
3,107,594	-				-0.2
3,107,656	-				+0.4
3,107,780	+		HSERO_RS13685	0.11	+0.4
3,107,816	-		HSERO_RS13685	0.16	-0.0
3,107,956	-				-1.9
3,108,062	-		HSERO_RS13685	0.48	+2.3
3,108,092	-		HSERO_RS13685	0.52	+0.7
3,108,456	-				+1.2
3,108,518	+				-1.9
3,108,649	+		HSERO_RS13690	0.15	-0.0
3,108,809	+		HSERO_RS13690	0.28	-0.0
3,108,894	-		HSERO_RS13690	0.35	+0.0
3,109,100	-		HSERO_RS13690	0.51	+0.7
3,109,399	+		HSERO_RS13690	0.75	+0.7
3,109,504	+		HSERO_RS13690	0.83	+0.7
3,109,570	-		HSERO_RS13690	0.88	+0.4
3,109,583	-		HSERO_RS13690	0.89	+0.3
3,109,836	-				-0.2
3,110,396	-		HSERO_RS13695	0.43	+0.2
3,110,549	+		HSERO_RS13695	0.52	+0.1
3,110,578	+		HSERO_RS13695	0.54	+0.5
3,110,623	-		HSERO_RS13695	0.57	+3.4
3,110,625	+		HSERO_RS13695	0.57	+0.5
3,110,652	-		HSERO_RS13695	0.58	-0.4