Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10140

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
2,288,300	+		HSERO_RS10135	0.59	+0.7
2,288,485	-		HSERO_RS10135	0.87	-0.4
2,288,845	+				+0.2
2,288,875	-				+1.2
2,288,898	-				+1.1
2,288,993	+		HSERO_RS10140	0.13	+1.2
2,289,001	-		HSERO_RS10140	0.14	+0.9
2,289,016	-		HSERO_RS10140	0.15	+0.1
2,289,087	-		HSERO_RS10140	0.21	+0.3
2,289,098	+		HSERO_RS10140	0.22	+0.6
2,289,098	+		HSERO_RS10140	0.22	+1.1
2,289,098	+		HSERO_RS10140	0.22	+0.6
2,289,106	-		HSERO_RS10140	0.22	+0.2
2,289,106	-				-1.9
2,289,106	-		HSERO_RS10140	0.22	+1.0
2,289,106	-		HSERO_RS10140	0.22	+2.1
2,289,151	-				-1.0
2,289,205	-		HSERO_RS10140	0.31	-0.1
2,289,279	+		HSERO_RS10140	0.37	+1.0
2,289,291	+		HSERO_RS10140	0.38	+1.3
2,289,785	-				-0.9
2,289,868	+		HSERO_RS10140	0.87	-0.8
2,290,007	-				+0.3
2,290,007	-				-0.1
2,290,081	-				+0.3
2,290,113	-				+1.5
2,290,213	-				+1.0
2,290,216	-				+0.8
2,290,264	-		HSERO_RS10145	0.12	+1.1
2,290,305	-		HSERO_RS10145	0.13	+0.6
2,290,318	-		HSERO_RS10145	0.14	+0.8
2,290,367	+		HSERO_RS10145	0.16	+1.1
2,290,404	-		HSERO_RS10145	0.18	+1.5
2,290,695	-		HSERO_RS10145	0.32	+1.1