Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09990

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
2,259,307	-		HSERO_RS09985	0.48	+0.2
2,259,308	+		HSERO_RS09985	0.48	-0.3
2,259,368	-		HSERO_RS09985	0.53	+0.9
2,259,485	+		HSERO_RS09985	0.61	-0.1
2,259,493	-		HSERO_RS09985	0.62	-0.2
2,259,831	-		HSERO_RS09985	0.87	-0.5
2,260,066	+				+0.5
2,260,143	-				+1.3
2,260,882	-		HSERO_RS09990	0.49	+0.5
2,261,736	-		HSERO_RS09995	0.15	+1.2
2,261,787	-		HSERO_RS09995	0.19	+0.1
2,261,803	+		HSERO_RS09995	0.20	-2.3
2,261,811	-		HSERO_RS09995	0.21	-1.5
2,262,120	+		HSERO_RS09995	0.49	+0.1
2,262,135	+		HSERO_RS09995	0.50	-0.1
2,262,140	+		HSERO_RS09995	0.51	-0.2
2,262,392	+		HSERO_RS09995	0.73	-0.1
2,262,400	-		HSERO_RS09995	0.74	+1.0