Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08075

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS08065 and HSERO_RS08070 are separated by 9 nucleotidesHSERO_RS08070 and HSERO_RS08075 overlap by 4 nucleotidesHSERO_RS08075 and HSERO_RS08080 are separated by 129 nucleotides HSERO_RS08065: HSERO_RS08065 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,843,830 to 1,845,014 _RS08065 HSERO_RS08070: HSERO_RS08070 - endonuclease IV, at 1,845,024 to 1,845,674 _RS08070 HSERO_RS08075: HSERO_RS08075 - ferredoxin, at 1,845,671 to 1,846,393 _RS08075 HSERO_RS08080: HSERO_RS08080 - poly[D(-)-3-hydroxyalkanoate] depolymerase, at 1,846,523 to 1,847,758 _RS08080 Position (kb) 1845 1846 1847Strain fitness (log2 ratio) -1 0 1 2at 1845.130 kb on + strand, within HSERO_RS08070at 1845.152 kb on - strand, within HSERO_RS08070at 1845.454 kb on + strand, within HSERO_RS08070at 1845.571 kb on + strand, within HSERO_RS08070at 1845.595 kb on + strand, within HSERO_RS08070at 1845.926 kb on - strand, within HSERO_RS08075at 1846.628 kb on - strandat 1846.926 kb on - strand, within HSERO_RS08080at 1847.006 kb on - strand, within HSERO_RS08080at 1847.040 kb on + strand, within HSERO_RS08080at 1847.048 kb on - strand, within HSERO_RS08080

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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1,845,130 + HSERO_RS08070 0.16 +0.6
1,845,152 - HSERO_RS08070 0.20 -0.5
1,845,454 + HSERO_RS08070 0.66 +0.3
1,845,571 + HSERO_RS08070 0.84 +0.4
1,845,595 + HSERO_RS08070 0.88 +0.3
1,845,926 - HSERO_RS08075 0.35 +0.9
1,846,628 - +0.4
1,846,926 - HSERO_RS08080 0.33 +0.5
1,847,006 - HSERO_RS08080 0.39 +2.0
1,847,040 + HSERO_RS08080 0.42 +2.1
1,847,048 - HSERO_RS08080 0.42 +0.6

Or see this region's nucleotide sequence