Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07320

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS07315 and HSERO_RS07320 are separated by 151 nucleotidesHSERO_RS07320 and HSERO_RS07325 are separated by 121 nucleotides HSERO_RS07315: HSERO_RS07315 - dihydrolipoamide dehydrogenase, at 1,677,210 to 1,679,000 _RS07315 HSERO_RS07320: HSERO_RS07320 - hypothetical protein, at 1,679,152 to 1,679,625 _RS07320 HSERO_RS07325: HSERO_RS07325 - chemotaxis protein, at 1,679,747 to 1,681,306 _RS07325 Position (kb) 1679 1680Strain fitness (log2 ratio) -1 0 1at 1679.020 kb on - strandat 1679.067 kb on - strandat 1679.264 kb on + strand, within HSERO_RS07320at 1679.657 kb on - strandat 1679.732 kb on + strandat 1679.839 kb on + strandat 1679.899 kb on + strandat 1679.992 kb on - strand, within HSERO_RS07325at 1680.008 kb on + strand, within HSERO_RS07325at 1680.093 kb on - strand, within HSERO_RS07325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
remove
1,679,020 - +0.3
1,679,067 - +0.0
1,679,264 + HSERO_RS07320 0.24 +0.5
1,679,657 - +0.5
1,679,732 + -0.8
1,679,839 + -0.5
1,679,899 + -0.3
1,679,992 - HSERO_RS07325 0.16 +0.3
1,680,008 + HSERO_RS07325 0.17 +0.1
1,680,093 - HSERO_RS07325 0.22 +0.1

Or see this region's nucleotide sequence